Parsing the functional specificity of Siderocalin / Lipocalin 2 / NGAL for siderophores and related small-molecule ligands
Clifton, M.C., Rupert, P.B., Hoette, T.M., Raymond, K.N., Abergel, R.J., Strong, R.K.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Neutrophil gelatinase-associated lipocalin | 183 | Homo sapiens | Mutation(s): 1  Gene Names: HNL, LCN2, NGAL, Oncogene 24p3 | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P80188 (Homo sapiens) Explore P80188  Go to UniProtKB:  P80188 | |||||
PHAROS:  P80188 GTEx:  ENSG00000148346  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P80188 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
PHU Query on PHU | D [auth A], H [auth A], J [auth B], N [auth C], S [auth C] | 1-phenylurea C7 H8 N2 O LUBJCRLGQSPQNN-UHFFFAOYSA-N | |||
SO4 Query on SO4 | E [auth A] G [auth A] K [auth B] M [auth B] O [auth C] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
EDO Query on EDO | I [auth A], P [auth C] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
CL Query on CL | F [auth A], L [auth B], Q [auth C] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 115.35 | α = 90 |
b = 115.35 | β = 90 |
c = 119.89 | γ = 90 |
Software Name | Purpose |
---|---|
XSCALE | data scaling |
REFMAC | refinement |
PDB_EXTRACT | data extraction |
XDS | data reduction |
PHASER | phasing |