3GVD

Crystal Structure of Serine Acetyltransferase CysE from Yersinia pestis


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free: 0.265 
  • R-Value Work: 0.199 
  • R-Value Observed: 0.202 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Crystal Structure of Serine Acetyltransferase CysE from Yersinia pestis

Kim, Y.Zhou, M.Peterson, S.Anderson, W.F.Joachimiak, A.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Serine acetyltransferase
A, B, C, D, E
A, B, C, D, E, F, G, H, I, J, K, L
276Yersinia pestisMutation(s): 0 
Gene Names: cysEYPO0070
EC: 2.3.1.30
UniProt
Find proteins for A0A2U2H3H7 (Yersinia pestis)
Explore A0A2U2H3H7 
Go to UniProtKB:  A0A2U2H3H7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A2U2H3H7
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 6 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
PG5
Query on PG5

Download Ideal Coordinates CCD File 
S [auth C]1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE
C8 H18 O4
YFNKIDBQEZZDLK-UHFFFAOYSA-N
CYS
Query on CYS

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AA [auth G]
DA [auth H]
EA [auth I]
IA [auth J]
MA [auth L]
AA [auth G],
DA [auth H],
EA [auth I],
IA [auth J],
MA [auth L],
NA [auth L],
O [auth A],
P [auth A],
R [auth B],
U [auth D],
V [auth D],
X [auth E]
CYSTEINE
C3 H7 N O2 S
XUJNEKJLAYXESH-REOHCLBHSA-N
PEG
Query on PEG

Download Ideal Coordinates CCD File 
LA [auth L]DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
SO4
Query on SO4

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BA [auth H],
JA [auth K],
KA [auth L],
M [auth A],
Y [auth F]
SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
GOL
Query on GOL

Download Ideal Coordinates CCD File 
CA [auth H],
FA [auth J],
Q [auth B],
W [auth E],
Z [auth F]
GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
ACY
Query on ACY

Download Ideal Coordinates CCD File 
GA [auth J],
HA [auth J],
N [auth A],
T [auth C]
ACETIC ACID
C2 H4 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free: 0.265 
  • R-Value Work: 0.199 
  • R-Value Observed: 0.202 
  • Space Group: P 1
  • Diffraction Data: https://doi.org/10.18430/m33gvd
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 68.472α = 97.07
b = 81.228β = 95.32
c = 139.406γ = 94.72
Software Package:
Software NamePurpose
SBC-Collectdata collection
HKL-3000data collection
MOLREPphasing
HKL-3000phasing
PHENIXrefinement
HKL-3000data reduction
HKL-3000data scaling

Structure Validation

View Full Validation Report



Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2009-05-12
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Non-polymer description, Version format compliance
  • Version 1.2: 2023-09-06
    Changes: Data collection, Database references, Derived calculations, Refinement description