3FY5

Dishevelled PDZ domain homodimer

• PDB DOI: https://doi.org/10.2210/pdb3FY5/pdb

• Classification: PROTEIN BINDING
• Organism(s): Xenopus laevis
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2009-01-21 Released: 2009-09-08 
• Deposition Author(s): Earnest, T., Friedland, N., Hung, L.-W., Moon, R.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.40 Å
• R-Value Free: 0.294 
• R-Value Work: 0.229 
• R-Value Observed: 0.232 

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 20.22 kDa 
• Atom Count: 1,293 
• Modelled Residue Count: 176 
• Deposited Residue Count: 182 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Segment polarity protein dishevelled homolog DVL-2	A, B	91	Xenopus laevis	Mutation(s): 0  Gene Names: dsh, dvl2
UniProt
Find proteins for P51142 (Xenopus laevis) Explore P51142  Go to UniProtKB:  P51142

Small Molecules

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A, B	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.40 Å
• R-Value Free: 0.294 
• R-Value Work: 0.229 
• R-Value Observed: 0.232 
• Space Group: P 6₁ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 96.198	α = 90
b = 96.198	β = 90
c = 93.557	γ = 120

Software Package:

Software Name	Purpose
ADSC	data collection
SOLVE	phasing
REFMAC	refinement
HKL-2000	data reduction
SCALEPACK	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2009-09-08 
Deposition Author(s): Earnest, T., Friedland, N., Hung, L.-W., Moon, R.

Revision History  

• Version 1.0: 2009-09-08
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance