3F4L
Crystal structure of a probable oxidoreductase yhhX in Triclinic form. Northeast Structural Genomics target ER647
- PDB DOI: https://doi.org/10.2210/pdb3F4L/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Escherichia coli K-12
- Expression System: Escherichia coli
- Mutation(s): No 
- Deposited: 2008-10-31 Released: 2008-11-25 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.264 
- R-Value Work: 0.231 
- R-Value Observed: 0.231 
wwPDB Validation   3D Report Full Report
This is version 1.2 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Putative oxidoreductase yhhX | 345 | Escherichia coli K-12 | Mutation(s): 0  Gene Names: b3440, JW3403, yhhX EC: 1 | ||
UniProt | |||||
Find proteins for P46853 (Escherichia coli (strain K12)) Explore P46853  Go to UniProtKB:  P46853 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P46853 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
Modified Residues 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A, B, C, D, E A, B, C, D, E, F | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.00 Å
- R-Value Free: 0.264 
- R-Value Work: 0.231 
- R-Value Observed: 0.231 
- Space Group: P 1
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 66.189 | α = 114.4 |
b = 100.785 | β = 103.31 |
c = 102.166 | γ = 101.62 |
Software Name | Purpose |
---|---|
ADSC | data collection |
SOLVE | phasing |
CNS | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
Entry History 
Deposition Data
- Released Date: 2008-11-25  Deposition Author(s): Seetharaman, J., Abashidze, M., Wang, H., Janjua, H., Foote, E.L., Xiao, R., Nair, R., Everett, J.K., Acton, T.B., Rost, B., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)
Revision History (Full details and data files)
- Version 1.0: 2008-11-25
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2023-12-27
Changes: Data collection, Database references, Derived calculations