Download MendeleyStructural basis for the substrate specificity of bone morphogenetic protein 1/tolloid-like metalloproteases
Mac Sweeney, A., Parrado, S.G., Vinzenz, D., Bernardi, A., Hein, A., Bodendorf, U., Erbel, P., Logel, C., Gerhartz, B.To be published.
3EDI
Crystal structure of tolloid-like protease 1 (TLL-1) protease domain
- PDB DOI: https://doi.org/10.2210/pdb3EDI/pdb
- Classification: HYDROLASE
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2008-09-03 Released: 2008-09-16
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.40 Å
- R-Value Free: 0.182
- R-Value Work: 0.154
- R-Value Observed: 0.155
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Tolloid-like protein 1 | 201 | Homo sapiens | Mutation(s): 0 Gene Names: TLL1, TLL EC: 3.4.24 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for O43897 (Homo sapiens) Explore O43897 Go to UniProtKB: O43897 | |||||
PHAROS: O43897 GTEx: ENSG00000038295 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O43897 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | E [auth A], F [auth A], G [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| DMS Query on DMS | H [auth A] | DIMETHYL SULFOXIDE C2 H6 O S IAZDPXIOMUYVGZ-UHFFFAOYSA-N |  | ||
| ZN Query on ZN | C [auth A], D [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
| ACE Query on ACE | B [auth A] | ACETYL GROUP C2 H4 O IKHGUXGNUITLKF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.40 Å
- R-Value Free: 0.182
- R-Value Work: 0.154
- R-Value Observed: 0.155
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 41.281 | α = 90 |
| b = 58.923 | β = 104.62 |
| c = 47.444 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XSCALE | data scaling |
| PHASER | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
Entry History
Deposition Data
- Released Date: 2008-09-16 Deposition Author(s): Mac Sweeney, A.
Revision History (Full details and data files)
- Version 1.0: 2008-09-16
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2023-11-01
Changes: Data collection, Database references, Derived calculations, Refinement description
