2XF2

PVC-AT


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.80 Å
  • R-Value Free: 0.173 
  • R-Value Work: 0.149 
  • R-Value Observed: 0.150 

Starting Model: experimental
View more details

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.6 of the entry. See complete history


Literature

X-Ray Investigation of Penicillium Vitale Catalase Inhibited by Aminotriazole

Borovik, A.Grebenko, A.I.Melik-Adamyan, W.R.

(2011) Crystallogr Rep 56: 590


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
CATALASEA,
B [auth E]
688Penicillium janthinellumMutation(s): 0 
EC: 1.11.1.6
UniProt
Find proteins for D9N167 (Penicillium janthinellum)
Explore D9N167 
Go to UniProtKB:  D9N167
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupD9N167
Glycosylation
Glycosylation Sites: 3
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 4 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
HDD
Query on HDD

Download Ideal Coordinates CCD File 
C [auth A],
K [auth E]
CIS-HEME D HYDROXYCHLORIN GAMMA-SPIROLACTONE
C34 H32 Fe N4 O5
UMGOPAWIGKFTRK-QQDQPIDJSA-N
NAG
Query on NAG

Download Ideal Coordinates CCD File 
D [auth A]
E [auth A]
F [auth A]
L [auth E]
M [auth E]
D [auth A],
E [auth A],
F [auth A],
L [auth E],
M [auth E],
N [auth E]
2-acetamido-2-deoxy-beta-D-glucopyranose
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
3TR
Query on 3TR

Download Ideal Coordinates CCD File 
G [auth A],
O [auth E]
3-AMINO-1,2,4-TRIAZOLE
C2 H4 N4
KLSJWNVTNUYHDU-UHFFFAOYSA-N
CA
Query on CA

Download Ideal Coordinates CCD File 
H [auth A]
I [auth A]
J [auth A]
P [auth E]
Q [auth E]
H [auth A],
I [auth A],
J [auth A],
P [auth E],
Q [auth E],
R [auth E]
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.80 Å
  • R-Value Free: 0.173 
  • R-Value Work: 0.149 
  • R-Value Observed: 0.150 
  • Space Group: P 31 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 144.3α = 90
b = 144.3β = 90
c = 133.8γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
MOLREPphasing

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2010-06-16
    Type: Initial release
  • Version 1.1: 2011-08-24
    Changes: Non-polymer description, Other, Version format compliance
  • Version 1.2: 2014-02-05
    Changes: Data collection, Database references
  • Version 1.3: 2019-07-24
    Changes: Data collection, Derived calculations
  • Version 1.4: 2019-10-16
    Changes: Data collection, Experimental preparation, Other
  • Version 1.5: 2020-07-29
    Type: Remediation
    Reason: Carbohydrate remediation
    Changes: Data collection, Derived calculations, Structure summary
  • Version 1.6: 2023-12-20
    Changes: Data collection, Database references, Derived calculations, Refinement description, Structure summary