2RNM

Structure of The HET-s(218-289) prion in its amyloid form obtained by solid-state NMR


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

Amyloid fibrils of the HET-s(218-289) prion form a beta solenoid with a triangular hydrophobic core

Wasmer, C.Lange, A.Van Melckebeke, H.Siemer, A.B.Riek, R.Meier, B.H.

(2008) Science 319: 1523-1526

  • DOI: https://doi.org/10.1126/science.1151839
  • Primary Citation of Related Structures:  
    2RNM

  • PubMed Abstract: 

    Prion and nonprion forms of proteins are believed to differ solely in their three-dimensional structure, which is therefore of paramount importance for the prion function. However, no atomic-resolution structure of the fibrillar state that is likely infectious has been reported to date. We present a structural model based on solid-state nuclear magnetic resonance restraints for amyloid fibrils from the prion-forming domain (residues 218 to 289) of the HET-s protein from the filamentous fungus Podospora anserina. On the basis of 134 intra- and intermolecular experimental distance restraints, we find that HET-s(218-289) forms a left-handed beta solenoid, with each molecule forming two helical windings, a compact hydrophobic core, at least 23 hydrogen bonds, three salt bridges, and two asparagine ladders. The structure is likely to have broad implications for understanding the infectious amyloid state.


  • Organizational Affiliation

    Physical Chemistry, ETH Zurich, 8093 Zurich, Switzerland.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Small s protein
A, B, C, D, E
79Podospora anserinaMutation(s): 0 
UniProt
Find proteins for Q03689 (Podospora anserina)
Explore Q03689 
Go to UniProtKB:  Q03689
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UniProt GroupQ03689
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2008-04-01
    Type: Initial release
  • Version 1.1: 2009-02-24
    Changes: Version format compliance
  • Version 1.2: 2015-06-17
    Changes: Version format compliance
  • Version 1.3: 2015-07-08
    Changes: Other