The Crystal Structure of Dihydrodipicolinate Synthase DapA from Agrobacterium tumefaciens
Kim, Y., Zhang, R., Xu, X., Zheng, H., Edwards, A., Savchenko, A., Joachimiak, A.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Dihydrodipicolinate synthase | 344 | Agrobacterium fabrum str. C58 | Mutation(s): 10  Gene Names: dapA | ![]() | |
UniProt | |||||
Find proteins for A9CGZ4 (Agrobacterium fabrum (strain C58 / ATCC 33970)) Explore A9CGZ4  Go to UniProtKB:  A9CGZ4 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A9CGZ4 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
MG Query on MG | B [auth A], C [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 101.102 | α = 90 |
b = 101.102 | β = 90 |
c = 120.914 | γ = 120 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
HKL-3000 | phasing |
SHELXE | model building |
SOLVE | phasing |
RESOLVE | phasing |
ARP/wARP | model building |