Crystal structure of nucleoside diphosphate kinase in complex with ATP analog
Kato-Murayama, M., Murayama, K., Terada, T., Shirouzu, M., Yokoyama, S.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Nucleoside diphosphate kinase | 160 | Pyrococcus horikoshii OT3 | Mutation(s): 0  Gene Names: ndk, PH0698 EC: 2.7.4.6 | ![]() | |
UniProt | |||||
Find proteins for O58429 (Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)) Explore O58429  Go to UniProtKB:  O58429 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O58429 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
AMP Query on AMP | D [auth A], F [auth B] | ADENOSINE MONOPHOSPHATE C10 H14 N5 O7 P UDMBCSSLTHHNCD-KQYNXXCUSA-N | |||
CL Query on CL | C [auth A], E [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Length ( Å ) | Angle ( ˚ ) |
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a = 115.622 | α = 90 |
b = 115.622 | β = 90 |
c = 194.171 | γ = 120 |
Software Name | Purpose |
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CNS | refinement |
CrystalClear | data collection |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
MOLREP | phasing |