2O8S

X-ray Crystal Structure of Protein AGR_C_984 from Agrobacterium tumefaciens. Northeast Structural Genomics Consortium Target AtR120.

• PDB DOI: https://doi.org/10.2210/pdb2O8S/pdb

• Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
• Organism(s): Agrobacterium fabrum str. C58
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2006-12-12 Released: 2007-01-30 
• Deposition Author(s): Seetharaman, J., Forouhar, F., Su, M., Zhao, L., Cunningham, K., Ma, L.-C., Janjua, H., Xiao, R., Liu, J., Baran, M.C., Acton, T.B., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.40 Å
• R-Value Free: 0.279 
• R-Value Work: 0.243 
• R-Value Observed: 0.243 

Literature

Crystal Structure of the Hypothetical Protein AGR_C_984 from Agrobacterium tumefaciens, Northeast Structural Genomics Target AtR120.

Seetharaman, J., Forouhar, F., Su, M., Zhao, L., Cunningham, K., Ma, L.-C., Janjua, H., Xiao, R., Liu, J., Baran, M.C., Acton, T.B., Montelione, G.T., Hunt, J.F., Tong, L.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Macromolecule Content

• Total Structure Weight: 70.84 kDa 
• Atom Count: 3,650 
• Modelled Residue Count: 460 
• Deposited Residue Count: 646 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
AGR_C_984p	A, B	323	Agrobacterium fabrum str. C58	Mutation(s): 6  Gene Names: locus_tag="AGR_C_984"
UniProt
Find proteins for Q7D182 (Agrobacterium fabrum (strain C58 / ATCC 33970)) Explore Q7D182  Go to UniProtKB:  Q7D182

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
SO4	C [auth A], D [auth B]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A, B	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.40 Å
• R-Value Free: 0.279 
• R-Value Work: 0.243 
• R-Value Observed: 0.243 
• Space Group: P 4₃

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 42.49	α = 90
b = 42.49	β = 90
c = 332.804	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
SOLVE	phasing
XTALVIEW	refinement
ADSC	data collection
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2007-01-30 
Deposition Author(s): Seetharaman, J., Forouhar, F., Su, M., Zhao, L., Cunningham, K., Ma, L.-C., Janjua, H., Xiao, R., Liu, J., Baran, M.C., Acton, T.B., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)

Revision History  

• Version 1.0: 2007-01-30
  Type: Initial release
  
• Version 1.1: 2008-05-01
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Source and taxonomy, Version format compliance
• Version 1.3: 2019-07-24
  Changes: Data collection, Derived calculations, Refinement description
• Version 1.4: 2019-08-14
  Changes: Data collection
• Version 1.5: 2023-12-27
  Changes: Data collection, Database references, Derived calculations
• Version 1.6: 2024-11-13
  Changes: Structure summary