Chemical Parameters Influencing Fine Tuning in the Binding of Macrolide Antibiotics to the Ribosomal Tunnel
Baram, D., Pyetan, E., Auerbach-Nevo, T., Yonath, A.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Length | Organism | Image | |
23S rRNA | 2,880 | Deinococcus radiodurans | ![]() | ||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
RU6 Query on RU6 | B [auth A] | (3AS,4R,7R,8S,9S,10R,11R,13R,15R,15AR)-4-ETHYL-11-METHOXY-3A,7,9,11,13,15-HEXAMETHYL-2,6,14-TRIOXO-1-[4-(4-PYRIDIN-3-YL-1H-IMIDAZOL-1-YL)BUTYL]-10-{[3,4,6-TRIDEOXY-3-(DIMETHYLAMINO)-BETA-D-XYLO-HEXOPYRANOSYL]OXY}TETRADECAHYDRO-2H-OXACYCLOTETRADECINO[4,3-D][1,3]OXAZOL-8-YL 2,6-DIDEOXY-3-C-METHYL-3-O-METHYL-ALPHA-L-RIBO-HEXOPYRANOSIDE C51 H81 N5 O13 LSUFMKOMGWIEMZ-IBNZHXLDSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 170.01 | α = 90 |
b = 411.475 | β = 90 |
c = 697.616 | γ = 90 |
Software Name | Purpose |
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CNS | refinement |