Structure of Human Calpain 8
Davis, T.L., Paramanathan, R., Butler-Cole, C., Finerty Jr., P.J., Weigelt, J., Sundstrom, M., Arrowsmith, C.H., Edwards, A.M., Bochkarev, A., Dhe-Paganon, S.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Calpain-8 | 326 | Homo sapiens | Mutation(s): 0  Gene Names: CAPN8, NCL2 EC: 3.4.22.53 | ![]() | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P17655 (Homo sapiens) Go to UniProtKB:  P17655 | |||||
PHAROS:  P17655 GTEx:  ENSG00000162909  | |||||
Find proteins for A6NHC0 (Homo sapiens) Explore A6NHC0  Go to UniProtKB:  A6NHC0 | |||||
PHAROS:  A6NHC0 GTEx:  ENSG00000203697  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A6NHC0 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Leupeptin Inhibitor | C [auth D], D [auth E] | 4 | Streptomyces roseus | Mutation(s): 0  | ![]() |
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
CA Query on CA | E [auth A], F [auth A], G [auth A], H [auth B], I [auth B] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |
Modified Residues 2 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
CSO Query on CSO | A, B | L-PEPTIDE LINKING | C3 H7 N O3 S | CYS | |
AR7 Query on AR7 | C [auth D], D [auth E] | PEPTIDE-LIKE | C6 H17 N4 O2 | ARG |
Entity ID: 2 | |||||
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ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
PRD_000216 Query on PRD_000216 | C [auth D], D [auth E] | LEUPEPTIN | Oligopeptide / Enzyme inhibitor |
Length ( Å ) | Angle ( ˚ ) |
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a = 91.794 | α = 90 |
b = 91.794 | β = 90 |
c = 194.592 | γ = 120 |
Software Name | Purpose |
---|---|
DENZO | data reduction |
SCALEPACK | data scaling |
PHASER | phasing |
REFMAC | refinement |
PDB_EXTRACT | data extraction |
HKL-2000 | data collection |
HKL-2000 | data reduction |
HKL-2000 | data scaling |