2I5T

Crystal Structure of hypothetical protein LOC79017 from Homo sapiens

• PDB DOI: https://doi.org/10.2210/pdb2I5T/pdb

• Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2006-08-25 Released: 2006-09-12 
• Deposition Author(s): Bae, E., Wesenberg, G.E., Phillips Jr., G.N., Bitto, E., Bingman, C.A., Center for Eukaryotic Structural Genomics (CESG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.01 Å
• R-Value Free: 0.234 
• R-Value Work: 0.183 
• R-Value Observed: 0.186 

Re-refinement Note

A newer entry is available that reflects an alternative modeling of the original data: 2Q53

Literature

Crystal structure of Homo sapiens protein LOC79017.

Bae, E., Bingman, C.A., Aceti, D.J., Phillips Jr., G.N.

(2008) Proteins 70: 588-591

• PubMed: 17932939 
• DOI: https://doi.org/10.1002/prot.21719
• Primary Citation of Related Structures:  
  2I5T, 2Q53

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Organizational Affiliation: 

Center for Eukaryotic Structural Genomics, University of Wisconsin-Madison, Madison, Wisconsin 53706, USA.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Macromolecule Content

• Total Structure Weight: 42.35 kDa 
• Atom Count: 2,880 
• Modelled Residue Count: 338 
• Deposited Residue Count: 376 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein C7orf24	A, B	188	Homo sapiens	Mutation(s): 4  Gene Names: C7orf24 EC: 4.3.2.9
UniProt & NIH Common Fund Data Resources
Find proteins for O75223 (Homo sapiens) Explore O75223  Go to UniProtKB:  O75223
PHAROS:  O75223 GTEx:  ENSG00000006625

Small Molecules

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A, B	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.01 Å
• R-Value Free: 0.234 
• R-Value Work: 0.183 
• R-Value Observed: 0.186 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 35.052	α = 90
b = 100.138	β = 90
c = 102.498	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
SHARP	phasing
DM	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction
HKL-2000	data reduction

Structure Validation

Entry History 

Deposition Data

• Released Date: 2006-09-12 
Deposition Author(s): Bae, E., Wesenberg, G.E., Phillips Jr., G.N., Bitto, E., Bingman, C.A., Center for Eukaryotic Structural Genomics (CESG)

Revision History  

• Version 1.0: 2006-09-12
  Type: Initial release
  
• Version 1.1: 2008-01-15
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2011-08-24
  Changes: Structure summary
• Version 1.4: 2017-10-18
  Changes: Refinement description
• Version 1.5: 2024-10-30
  Changes: Data collection, Database references, Derived calculations, Structure summary