2H6C

Crystal structure of reduced CprK in absence of any ligand


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.90 Å
  • R-Value Free: 0.307 
  • R-Value Work: 0.232 
  • R-Value Observed: 0.235 

Starting Model: experimental
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This is version 1.3 of the entry. See complete history


Literature

CprK Crystal Structures Reveal Mechanism for Transcriptional Control of Halorespiration.

Joyce, M.G.Levy, C.Pop, S.M.Biehl, B.D.Doukov, T.I.Ryter, J.M.Mazon, H.Smidt, H.van den Heuvel, R.H.Ragsdale, S.W.van der Oost, J.Leys, D.

(2006) J Biol Chem 281: 28318-28325

  • DOI: https://doi.org/10.1074/jbc.M602654200
  • Primary Citation of Related Structures:  
    2H6B, 2H6C

  • PubMed Abstract: 

    Halorespiration is a bacterial respiratory process in which haloorganic compounds act as terminal electron acceptors. This process is controlled at transcriptional level by CprK, a member of the ubiquitous CRP-FNR family. Here we present the crystal structures of oxidized CprK in presence of the ligand ortho-chlorophenolacetic acid and of reduced CprK in absence of this ligand. These structures reveal that highly specific binding of chlorinated, rather than the corresponding non-chlorinated, phenolic compounds in the NH(2)-terminal beta-barrels causes reorientation of these domains with respect to the central alpha-helix at the dimer interface. Unexpectedly, the COOH-terminal DNA-binding domains dimerize in the non-DNA binding state. We postulate the ligand-induced conformational change allows formation of interdomain contacts that disrupt the DNA domain dimer interface and leads to repositioning of the helix-turn-helix motifs. These structures provide a structural framework for further studies on transcriptional control by CRP-FNR homologs in general and of halorespiration regulation by CprK in particular.


  • Organizational Affiliation

    Manchester Interdisciplinary Biocentre, P. O. Box 88, Manchester, M60 1QD, United Kingdom.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
ChloroPhenol Reduction gene K
A, B
232Desulfitobacterium dehalogenansMutation(s): 0 
Gene Names: cprK
UniProt
Find proteins for Q9LAS2 (Desulfitobacterium dehalogenans)
Explore Q9LAS2 
Go to UniProtKB:  Q9LAS2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9LAS2
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.90 Å
  • R-Value Free: 0.307 
  • R-Value Work: 0.232 
  • R-Value Observed: 0.235 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 72.637α = 90
b = 50.03β = 105.54
c = 76.415γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
CrystalCleardata reduction
DENZOdata reduction
SCALEPACKdata scaling
PHASERphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2006-07-04
    Type: Initial release
  • Version 1.1: 2008-05-01
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Advisory, Version format compliance
  • Version 1.3: 2023-08-30
    Changes: Data collection, Database references, Refinement description