1WFM

The first C2 domain of human synaptotagmin XIII

• PDB DOI: https://doi.org/10.2210/pdb1WFM/pdb
• BMRB: 10074

• Classification: ENDOCYTOSIS/EXOCYTOSIS
• Organism(s): Homo sapiens
• Mutation(s): No 
• Membrane Protein: Yes  OPM


• Deposited: 2004-05-26 Released: 2004-11-26 
• Deposition Author(s): Nagashima, T., Hayashi, F., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with the least restraint violations, target function 

Literature

The first C2 domain of human synaptotagmin XIII

Nagashima, T., Hayashi, F., Yokoyama, S.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 14.75 kDa 
• Atom Count: 1,033 
• Modelled Residue Count: 138 
• Deposited Residue Count: 138 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
synaptotagmin XIII	A	138	Homo sapiens	Mutation(s): 0  Gene Names: Kazusa cDNA fh02770 Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for Q7L8C5 (Homo sapiens) Explore Q7L8C5  Go to UniProtKB:  Q7L8C5
PHAROS:  Q7L8C5 GTEx:  ENSG00000019505

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with the least restraint violations, target function 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2004-11-26 
Deposition Author(s): Nagashima, T., Hayashi, F., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History  

• Version 1.0: 2004-11-26
  Type: Initial release
  
• Version 1.1: 2008-04-30
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2022-03-02
  Changes: Data collection, Database references, Derived calculations
• Version 1.4: 2024-05-29
  Changes: Data collection