Download MendeleyCrystal structure of hypothetical protein (ATU3699) from Agrobacterium tumefaciens at 1.60 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
1VKI
Crystal structure of a putative oligo-nucleotide binding protein (atu3699, agr_l_2275) from agrobacterium tumefaciens str. c58 at 1.60 A resolution
- PDB DOI: https://doi.org/10.2210/pdb1VKI/pdb
- Classification: TRANSLATION
- Organism(s): Agrobacterium fabrum str. C58
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2004-05-24 Released: 2004-06-08
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.185
- R-Value Work: 0.152
- R-Value Observed: 0.154
Starting Model: experimental
View more details
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| HYPOTHETICAL PROTEIN ATU3699 | 181 | Agrobacterium fabrum str. C58 | Mutation(s): 0 Gene Names: ATU3699 |  | |
UniProt | |||||
Find proteins for A9CFJ8 (Agrobacterium fabrum (strain C58 / ATCC 33970)) Explore A9CFJ8 Go to UniProtKB: A9CFJ8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A9CFJ8 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | C [auth A], E [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| GOL Query on GOL | D [auth A], F [auth B], G [auth B], H [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.60 Å
- R-Value Free: 0.185
- R-Value Work: 0.152
- R-Value Observed: 0.154
- Space Group: P 1 21 1
- Diffraction Data: https://doi.org/10.18430/M31VKI
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 35.997 | α = 90 |
| b = 64.848 | β = 100.92 |
| c = 77.427 | γ = 90 |
| Software Name | Purpose |
|---|---|
| DENZO | data reduction |
| SCALEPACK | data scaling |
| MOLREP | phasing |
| REFMAC | refinement |
Entry History
Deposition Data
- Released Date: 2004-06-08 Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History (Full details and data files)
- Version 1.0: 2004-06-08
Type: Initial release - Version 1.1: 2008-04-26
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Non-polymer description, Version format compliance - Version 1.3: 2023-01-25
Changes: Database references, Derived calculations - Version 1.4: 2023-09-20
Changes: Data collection, Refinement description
