1V7Q

Crystal structure of phosphoglycerate mutase from Thermus thermophilus HB8

• PDB DOI: https://doi.org/10.2210/pdb1V7Q/pdb

• Classification: ISOMERASE
• Organism(s): Thermus thermophilus
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2003-12-22 Released: 2005-02-15 
• Deposition Author(s): Sugahara, M., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.59 Å
• R-Value Free: 0.241 
• R-Value Work: 0.222 
• R-Value Observed: 0.223 

Starting Model: experimental

Literature

Crystal structure of phosphoglycerate mutase from Thermus thermophilus HB8

Sugahara, M., Kunishima, N.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 19.63 kDa 
• Atom Count: 1,462 
• Modelled Residue Count: 169 
• Deposited Residue Count: 177 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
phosphoglycerate mutase	A	177	Thermus thermophilus	Mutation(s): 0  EC: 5.4.2.1
UniProt
Find proteins for Q53WB3 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q53WB3  Go to UniProtKB:  Q53WB3

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.59 Å
• R-Value Free: 0.241 
• R-Value Work: 0.222 
• R-Value Observed: 0.223 
• Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 42.82	α = 90
b = 42.82	β = 90
c = 156.516	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data collection
SCALEPACK	data scaling
MOLREP	phasing
CNS	refinement
HKL-2000	data reduction

Structure Validation

Entry History 

Deposition Data

• Released Date: 2005-02-15 
Deposition Author(s): Sugahara, M., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History  

• Version 1.0: 2005-02-15
  Type: Initial release
  
• Version 1.1: 2008-04-27
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2023-10-25
  Changes: Data collection, Database references, Refinement description