Impact of Fc Glycans on The Effector Functions Vary with the Antibody mechanism of Action
Raju, T.S., Mulkerrin, M.G., Parker, M., De Vos, A.M., Gazzano-Santoro, H., Totpal, K., Ultsch, M.H.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
immunoglobulin gamma-1 heavy chain constant region | A, C [auth B] | 212 | Homo sapiens | Mutation(s): 0  | ![]() |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P01857 (Homo sapiens) Explore P01857  Go to UniProtKB:  P01857 | |||||
PHAROS:  P01857 GTEx:  ENSG00000211896  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P01857 | ||||
Glycosylation | |||||
Glycosylation Sites: 1 | Go to GlyGen: P01857-2 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Minimized version of Protein A (Z34C) | B [auth C], D | 34 | synthetic construct | Mutation(s): 0  | ![]() |
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | E | 8 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G59451NL GlyCosmos:  G59451NL GlyGen:  G59451NL |
Entity ID: 4 | |||||
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Molecule | Chains | Length | 2D Diagram | Glycosylation | 3D Interactions |
2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | F | 8 | N-Glycosylation | ||
Glycosylation Resources | |||||
GlyTouCan:  G50842MS GlyCosmos:  G50842MS GlyGen:  G50842MS |
Length ( Å ) | Angle ( ˚ ) |
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a = 85.782 | α = 90 |
b = 126.413 | β = 90 |
c = 54.743 | γ = 90 |
Software Name | Purpose |
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X-PLOR | refinement |
DENZO | data reduction |
SCALEPACK | data scaling |
AMoRE | phasing |