1X6H

Solution structures of the C2H2 type zinc finger domain of human Transcriptional repressor CTCF

• PDB DOI: https://doi.org/10.2210/pdb1X6H/pdb
• BMRB: 10246

• Classification: DNA BINDING PROTEIN
• Organism(s): Homo sapiens
• Mutation(s): No 


• Deposited: 2005-05-17 Released: 2005-11-17 
• Deposition Author(s): Sato, M., Saito, K., Koshiba, S., Inoue, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: target function,structures with the least restraint violations 

Literature

Solution structures of the C2H2 type zinc finger domain of human Transcriptional repressor CTCF

Sato, M., Saito, K., Koshiba, S., Inoue, M., Kigawa, T., Yokoyama, S.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 9.47 kDa 
• Atom Count: 652 
• Modelled Residue Count: 86 
• Deposited Residue Count: 86 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Transcriptional repressor CTCF	A	86	Homo sapiens	Mutation(s): 0  Gene Names: CTCF
UniProt & NIH Common Fund Data Resources
Find proteins for P49711 (Homo sapiens) Explore P49711  Go to UniProtKB:  P49711
PHAROS:  P49711 GTEx:  ENSG00000102974

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
ZN	B [auth A], C [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: target function,structures with the least restraint violations 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2005-11-17 
Deposition Author(s): Sato, M., Saito, K., Koshiba, S., Inoue, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History  

• Version 1.0: 2005-11-17
  Type: Initial release
  
• Version 1.1: 2008-04-30
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2022-03-02
  Changes: Data collection, Database references, Derived calculations
• Version 1.4: 2024-05-29
  Changes: Data collection