1SVD

The structure of Halothiobacillus neapolitanus RuBisCo


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.80 Å
  • R-Value Free: 0.166 
  • R-Value Work: 0.145 
  • R-Value Observed: 0.146 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

The structure of Halothiobacillus neapolitanus RuBisCo

Kerfeld, C.A.Sawaya, M.R.Pashkov, I.Cannon, G.Williams, E.Tran, K.Yeates, T.O.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit473Halothiobacillus neapolitanusMutation(s): 0 
EC: 4.1.1.39
UniProt
Find proteins for O85040 (Halothiobacillus neapolitanus (strain ATCC 23641 / c2))
Explore O85040 
Go to UniProtKB:  O85040
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO85040
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Ribulose bisphosphate carboxylase small chainB [auth M]110Halothiobacillus neapolitanusMutation(s): 0 
EC: 4.1.1.39
UniProt
Find proteins for P45686 (Halothiobacillus neapolitanus (strain ATCC 23641 / c2))
Explore P45686 
Go to UniProtKB:  P45686
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP45686
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.80 Å
  • R-Value Free: 0.166 
  • R-Value Work: 0.145 
  • R-Value Observed: 0.146 
  • Space Group: I 4 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 157.066α = 90
b = 157.066β = 90
c = 107.609γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
MLPHAREphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2005-04-12
    Type: Initial release
  • Version 1.1: 2008-04-30
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Advisory, Version format compliance
  • Version 1.3: 2023-08-23
    Changes: Data collection, Database references, Derived calculations, Refinement description