Crystal structure of Tdp1 catalytic domain
Lountos, G.T., Zhao, X.Z., Kiselev, E., Tropea, J.E., Needle, D., Burke Jr., T.R., Pommier, Y., Waugh, D.S.To be published.
Experimental Data Snapshot
Starting Model: experimental
View more details
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Tyrosyl-DNA phosphodiesterase 1 | 461 | Homo sapiens | Mutation(s): 0  Gene Names: TDP1 EC: 3.1.4 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9NUW8 (Homo sapiens) Explore Q9NUW8  Go to UniProtKB:  Q9NUW8 | |||||
PHAROS:  Q9NUW8 GTEx:  ENSG00000042088  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9NUW8 | ||||
Sequence AnnotationsExpand | |||||
|
Ligands 3 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
KAY Query on KAY | C [auth A], G [auth B] | 4-methylbenzene-1,2-dicarboxylic acid C9 H8 O4 CWJJAFQCTXFSTA-UHFFFAOYSA-N | |||
DMS Query on DMS | F [auth A], K [auth B] | DIMETHYL SULFOXIDE C2 H6 O S IAZDPXIOMUYVGZ-UHFFFAOYSA-N | |||
EDO Query on EDO | D [auth A], E [auth A], H [auth B], I [auth B], J [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 49.927 | α = 90 |
b = 105.202 | β = 90 |
c = 193.743 | γ = 90 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
HKL-3000 | data reduction |
HKL-3000 | data scaling |
PHASER | phasing |