Download MendeleySecond bromodomain of Human BRD2 with a Tetrahydroquinoline analogue
White, S.W., Yun, M.To be published.
6DBC
Second bromodomain of Human BRD2 with a Tetrahydroquinoline analogue
- PDB DOI: https://doi.org/10.2210/pdb6DBC/pdb
- Classification: Transcription/inhibitor
- Organism(s): Homo sapiens
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2018-05-03 Released: 2019-11-13
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.05 Å
- R-Value Free: 0.132
- R-Value Work: 0.128
- R-Value Observed: 0.128
Starting Model: experimental
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This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Bromodomain-containing protein 2 | 115 | Homo sapiens | Mutation(s): 0 Gene Names: BRD2, KIAA9001, RING3 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P25440 (Homo sapiens) Explore P25440 Go to UniProtKB: P25440 | |||||
GTEx: ENSG00000204256 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P25440 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| G3J (Subject of Investigation/LOI) Query on G3J | I [auth A] | 1-[(2S,4R)-4-[(2-chlorophenyl)amino]-2-methyl-6-(1H-pyrazol-3-yl)-3,4-dihydroquinolin-1(2H)-yl]ethan-1-one C21 H21 Cl N4 O XRGFSBWBLFRFEN-RNODOKPDSA-N |  | ||
| EDO Query on EDO | B [auth A] C [auth A] D [auth A] E [auth A] F [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.05 Å
- R-Value Free: 0.132
- R-Value Work: 0.128
- R-Value Observed: 0.128
- Space Group: P 21 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 52.394 | α = 90 |
| b = 72.186 | β = 90 |
| c = 31.975 | γ = 90 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data scaling |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| HKL-2000 | data reduction |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2019-11-13 Deposition Author(s): White, S.W., Yun, M.
Revision History (Full details and data files)
- Version 1.0: 2019-11-13
Type: Initial release - Version 1.1: 2023-10-04
Changes: Data collection, Database references, Refinement description
