6B3I

Annexin A13a


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.60 Å
  • R-Value Free: 0.230 
  • R-Value Work: 0.193 
  • R-Value Observed: 0.195 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.3 of the entry. See complete history


Literature

An alternative N-terminal fold of the intestine-specific annexin A13a induces dimerization and regulates membrane-binding.

McCulloch, K.M.Yamakawa, I.Shifrin Jr., D.A.McConnell, R.E.Foegeding, N.J.Singh, P.K.Mao, S.Tyska, M.J.Iverson, T.M.

(2019) J Biol Chem 294: 3454-3463

  • DOI: https://doi.org/10.1074/jbc.RA118.004571
  • Primary Citation of Related Structures:  
    6B3I

  • PubMed Abstract: 

    Annexin proteins function as Ca 2+ -dependent regulators of membrane trafficking and repair that may also modulate membrane curvature. Here, using high-resolution confocal imaging, we report that the intestine-specific annexin A13 (ANX A13) localizes to the tips of intestinal microvilli and determined the crystal structure of the ANX A13a isoform to 2.6 Å resolution. The structure revealed that the N terminus exhibits an alternative fold that converts the first two helices and the associated helix-loop-helix motif into a continuous α-helix, as stabilized by a domain-swapped dimer. We also found that the dimer is present in solution and partially occludes the membrane-binding surfaces of annexin, suggesting that dimerization may function as a means for regulating membrane binding. Accordingly, as revealed by in vitro binding and cellular localization assays, ANX A13a variants that favor a monomeric state exhibited increased membrane association relative to variants that favor the dimeric form. Together, our findings support a mechanism for how the association of the ANX A13a isoform with the membrane is regulated.


  • Organizational Affiliation

    From the Departments of Pharmacology.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Annexin
A, B, C
343Homo sapiensMutation(s): 0 
Gene Names: ANXA13
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for P27216 (Homo sapiens)
Explore P27216 
Go to UniProtKB:  P27216
PHAROS:  P27216
GTEx:  ENSG00000104537 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP27216
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

Unit Cell:
Length ( Å )Angle ( ˚ )
a = 190.623α = 90
b = 93.815β = 106.02
c = 94.858γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of Diabetes and Digestive and Kidney Disease (NIH/NIDDK)United StatesP30DK058404

Revision History  (Full details and data files)

  • Version 1.0: 2018-10-10
    Type: Initial release
  • Version 1.1: 2019-04-24
    Changes: Data collection, Database references, Structure summary
  • Version 1.2: 2019-12-25
    Changes: Author supporting evidence
  • Version 1.3: 2023-10-04
    Changes: Data collection, Database references, Refinement description