5WCF

Human HMT1 hnRNP methyltransferase-like protein 6 (S. cerevisiae)

• PDB DOI: https://doi.org/10.2210/pdb5WCF/pdb

• Classification: TRANSFERASE
• Organism(s): Homo sapiens
• Expression System: unidentified baculovirus
• Mutation(s): No 


• Deposited: 2017-06-30 Released: 2017-08-02 
• Deposition Author(s): Dong, A., Zeng, H., Hutch, A., Seitova, A., Walker, J.R., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Brown, P.J., Wu, H., Structural Genomics Consortium (SGC)

---

Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.98 Å
• R-Value Free: 0.208 
• R-Value Work: 0.200 
• R-Value Observed: 0.200 

Starting Model: experimental

Literature

The Crystal Structure of Human HMT1 hnRNP methyltransferase-like protein 6 in complex with MTLLE1441

Zeng, H., Dong, A., Hutch, A., Seitova, A., Walker, J.R., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Brown, P.J., Wu, H., Structural Genomics Consortium (SGC)

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 43.02 kDa 
• Atom Count: 2,768 
• Modelled Residue Count: 319 
• Deposited Residue Count: 376 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein arginine N-methyltransferase 6	A	376	Homo sapiens	Mutation(s): 0  Gene Names: PRMT6, HRMT1L6 EC: 2.1.1.319
UniProt & NIH Common Fund Data Resources
Find proteins for Q96LA8 (Homo sapiens) Explore Q96LA8  Go to UniProtKB:  Q96LA8
PHAROS:  Q96LA8 GTEx:  ENSG00000198890

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
A0S	C [auth A]	(5R)-4-(5-bromofuran-2-carbonyl)-5-(4-fluorophenyl)-7-methyl-1,3,4,5-tetrahydro-2H-1,4-benzodiazepin-2-one C21 H16 Br F N2 O3 IPHKQIFYQWJQAB-HXUWFJFHSA-N
SAH	B [auth A]	S-ADENOSYL-L-HOMOCYSTEINE C14 H20 N6 O5 S ZJUKTBDSGOFHSH-WFMPWKQPSA-N
144	D [auth A]	TRIS-HYDROXYMETHYL-METHYL-AMMONIUM C4 H12 N O3 DRDCQJADRSJFFD-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.98 Å
• R-Value Free: 0.208 
• R-Value Work: 0.200 
• R-Value Observed: 0.200 
• Space Group: I 4₁
• Diffraction Data: https://doi.org/10.18430/M35WCF

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 94.721	α = 90
b = 94.721	β = 90
c = 108.713	γ = 90

Software Package:

Software Name	Purpose
SCALEPACK	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
HKL-3000	data reduction
HKL-3000	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2017-08-02 
Deposition Author(s): Dong, A., Zeng, H., Hutch, A., Seitova, A., Walker, J.R., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Brown, P.J., Wu, H., Structural Genomics Consortium (SGC)

Revision History  

• Version 1.0: 2017-08-02
  Type: Initial release
  
• Version 1.1: 2023-10-04
  Changes: Data collection, Database references, Refinement description