Structural and functional characterization of the human Syncytin 1 fusion protein
Aydin, H., Thavalingam, A., Bikopoulos, G., Sultana, A., Lee, J.E.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Syncytin-1 | 117 | Homo sapiens | Mutation(s): 1  Gene Names: ERVW-1, ERVWE1 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9UQF0 (Homo sapiens) Explore Q9UQF0  Go to UniProtKB:  Q9UQF0 | |||||
PHAROS:  Q9UQF0 GTEx:  ENSG00000242950  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9UQF0 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
CL Query on CL | C [auth A], D [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 48.118 | α = 90 |
b = 48.118 | β = 90 |
c = 378.911 | γ = 120 |
Software Name | Purpose |
---|---|
Aimless | data scaling |
PHENIX | refinement |
PDB_EXTRACT | data extraction |
XDS | data reduction |
PHASER | phasing |
Coot | model building |
Funding Organization | Location | Grant Number |
---|---|---|
Canadian Institutes of Health Research (CIHR) | Canada | CIHR MOP-115066 |