5GHB

SOLUTION STRUCTURE OF LYS42 ACETYLATED HUMAN SUMO2

PDB DOI: https://doi.org/10.2210/pdb5GHB/pdb
BMRB: 36006

Classification: STRUCTURAL GENOMICS
Organism(s): Homo sapiens
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2016-06-19 Released: 2017-06-07
Deposition Author(s): Naik, M.T., Naik, N., Shih, H., Huang, T.

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 400
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

wwPDB Validation 3D Report Full Report

This is version 2.1 of the entry. See complete history.

Literature

Structures Of Human Sumo

Naik, M.T., Naik, N., Shih, H., Huang, T.

To be published.

Macromolecule Content

Total Structure Weight: 12.28 kDa
Atom Count: 745
Modelled Residue Count: 93
Deposited Residue Count: 107
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ubiquitin-related modifier 2	A	107	Homo sapiens	Mutation(s): 0 Gene Names: SUMO2, SMT3B, SMT3H2
UniProt & NIH Common Fund Data Resources
Find proteins for P61956 (Homo sapiens) Explore P61956 Go to UniProtKB: P61956
PHAROS: P61956 GTEx: ENSG00000188612
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P61956
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
ALY Query on ALY	A	L-PEPTIDE LINKING	C₈ H₁₆ N₂ O₃		LYS

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 400
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2017-06-07

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2017-06-07
Type: Initial release
Version 1.1: 2023-10-11
Changes: Data collection, Database references
Version 2.0: 2023-11-15
Changes: Atomic model, Data collection
Version 2.1: 2024-10-23
Changes: Database references, Structure summary

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.