Download MendeleyCrystal Structure of the first bromodomain of BRD4 in complex with AYC
Dong, J., Caflish, A.To be published.
5E0R
Crystal Structure of the first bromodomain of BRD4 in complex with AYC
- PDB DOI: https://doi.org/10.2210/pdb5E0R/pdb
- Classification: Transcription/transcription Inhibitor
- Organism(s): Homo sapiens
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2015-09-29 Released: 2016-10-12
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.35 Å
- R-Value Free: 0.198
- R-Value Work: 0.171
- R-Value Observed: 0.172
Starting Model: experimental
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This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Bromodomain-containing protein 4 | 127 | Homo sapiens | Mutation(s): 0 Gene Names: BRD4, HUNK1 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for O60885 (Homo sapiens) Explore O60885 Go to UniProtKB: O60885 | |||||
PHAROS: O60885 GTEx: ENSG00000141867 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O60885 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 5J5 Query on 5J5 | B [auth A], C [auth A], D [auth A], E [auth A], F [auth A] | 2-[(chloroacetyl)amino]-5-[(E)-(4-sulfophenyl)diazenyl]benzenesulfonic acid C14 H12 Cl N3 O7 S2 VKZZMWQUZNYGMS-ISLYRVAYSA-N |  | ||
| DMS Query on DMS | G [auth A] | DIMETHYL SULFOXIDE C2 H6 O S IAZDPXIOMUYVGZ-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.35 Å
- R-Value Free: 0.198
- R-Value Work: 0.171
- R-Value Observed: 0.172
- Space Group: P 21 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 36.776 | α = 90 |
| b = 44.538 | β = 90 |
| c = 77.964 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SCALA | data scaling |
| PHASER | phasing |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
Entry History
Deposition Data
- Released Date: 2016-10-12 Deposition Author(s): Dong, J., Caflisch, A.
Revision History (Full details and data files)
- Version 1.0: 2016-10-12
Type: Initial release - Version 1.1: 2024-01-10
Changes: Data collection, Database references, Refinement description
