Structure of human DNA polymerase beta complexed with 7BG as the template base in a 1-nucleotide gapped DNA
Lee, S., Koag, M.-C.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA polymerase beta | 335 | Homo sapiens | Mutation(s): 0  Gene Names: POLB EC: 2.7.7.7 (PDB Primary Data), 4.2.99 (PDB Primary Data) | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P06746 (Homo sapiens) Explore P06746  Go to UniProtKB:  P06746 | |||||
PHAROS:  P06746 GTEx:  ENSG00000070501  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P06746 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Length | Organism | Image | |
DNA 16-mer (template) | B [auth T] | 16 | Homo sapiens | ||
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Entity ID: 3 | |||||
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Molecule | Chains | Length | Organism | Image | |
DNA 10-mer (up-primer) | C [auth P] | 10 | Homo sapiens | ||
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Entity ID: 4 | |||||
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Molecule | Chains | Length | Organism | Image | |
DNA 5-mer (dn-primer) | 5 | Homo sapiens | |||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NA Query on NA | E [auth A], F [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 54.426 | α = 90 |
b = 78.966 | β = 106.34 |
c = 54.838 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
MOLREP | phasing |
Funding Organization | Location | Grant Number |
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National Institutes of Health/National Institute of Environmental Health Sciences (NIH/NIEHS) | United States | ES23101 |