4XWX

Crystal structure of the PTB domain of SHC

• PDB DOI: https://doi.org/10.2210/pdb4XWX/pdb

• Classification: SIGNALING PROTEIN
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2015-01-29 Released: 2015-02-25 
• Deposition Author(s): Chaikuad, A., Tallant, C., Krojer, T., Dixon-Clarke, S., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Knapp, S., Structural Genomics Consortium (SGC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.87 Å
• R-Value Free: 0.191 
• R-Value Work: 0.168 
• R-Value Observed: 0.169 

Literature

Crystal structure of the PTB domain of SHC

Chaikuad, A., Tallant, C., Krojer, T., Dixon-Clarke, S., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Knapp, S., Structural Genomics Consortium (SGC)

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 18.53 kDa 
• Atom Count: 1,338 
• Modelled Residue Count: 160 
• Deposited Residue Count: 167 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
SHC-transforming protein 1	A	167	Homo sapiens	Mutation(s): 0  Gene Names: SHC1, SHC, SHCA
UniProt & NIH Common Fund Data Resources
Find proteins for P29353 (Homo sapiens) Explore P29353  Go to UniProtKB:  P29353
PHAROS:  P29353 GTEx:  ENSG00000160691

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
EDO	B [auth A], C [auth A], D [auth A], E [auth A], F [auth A], G [auth A]	1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N
NA	H [auth A]	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.87 Å
• R-Value Free: 0.191 
• R-Value Work: 0.168 
• R-Value Observed: 0.169 
• Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 64.91	α = 90
b = 126.79	β = 90
c = 50.4	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
MOSFLM	data reduction
SCALA	data scaling
SHARP	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2015-02-25 
Deposition Author(s): Chaikuad, A., Tallant, C., Krojer, T., Dixon-Clarke, S., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Knapp, S., Structural Genomics Consortium (SGC)

Revision History  

• Version 1.0: 2015-02-25
  Type: Initial release
  
• Version 1.1: 2024-05-08
  Changes: Data collection, Database references, Derived calculations