3K7J

Crystal structure of the D100E mutant of the Indian Hedgehog N-terminal signalling domain

• PDB DOI: https://doi.org/10.2210/pdb3K7J/pdb

• Classification: SIGNALING PROTEIN
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2009-10-13 Released: 2011-01-26 
• Deposition Author(s): He, Y.-X., Kang, Y., Zhang, W.J., Yu, J., Ma, G., Zhou, C.-Z.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.90 Å
• R-Value Free: 0.276 
• R-Value Work: 0.200 
• R-Value Observed: 0.203 

Starting Model: experimental

Literature

Crystal structure of the D100E mutant of the Indian Hedgehog N-terminal signalling domain

He, Y.-X., Kang, Y., Zhang, W.J., Yu, J., Ma, G., Zhou, C.-Z.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 21.74 kDa 
• Atom Count: 1,313 
• Modelled Residue Count: 146 
• Deposited Residue Count: 187 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Indian hedgehog protein	A [auth B]	187	Homo sapiens	Mutation(s): 1  Gene Names: IHH
UniProt & NIH Common Fund Data Resources
Find proteins for Q14623 (Homo sapiens) Explore Q14623  Go to UniProtKB:  Q14623
GTEx:  ENSG00000163501

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
SO4	C [auth B], D [auth B], E [auth B], F [auth B], G [auth B]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L
ZN	B	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N
CO3	H [auth B]	CARBONATE ION C O3 BVKZGUZCCUSVTD-UHFFFAOYSA-L

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.90 Å
• R-Value Free: 0.276 
• R-Value Work: 0.200 
• R-Value Observed: 0.203 
• Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 84.16	α = 90
b = 52.4	β = 89.97
c = 34.66	γ = 90

Software Package:

Software Name	Purpose
MAR345dtb	data collection
MOLREP	phasing
PHENIX	refinement
MOSFLM	data reduction
SCALA	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2011-01-26 
Deposition Author(s): He, Y.-X., Kang, Y., Zhang, W.J., Yu, J., Ma, G., Zhou, C.-Z.

Revision History  

• Version 1.0: 2011-01-26
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2023-11-01
  Changes: Data collection, Database references, Derived calculations, Refinement description