2WH5

Crystal structure of human acyl-CoA binding domain 4 complexed with stearoyl-CoA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.60 Å
  • R-Value Free: 0.236 
  • R-Value Work: 0.206 
  • R-Value Observed: 0.207 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.3 of the entry. See complete history


Literature

Crystal Structure of Human Acyl-Coa Binding Domain 4

Shafqat, N.Yue, W.W.Oppermann, U.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 4
A, B, C, D, E
A, B, C, D, E, F
106Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for Q8NC06 (Homo sapiens)
Explore Q8NC06 
Go to UniProtKB:  Q8NC06
PHAROS:  Q8NC06
GTEx:  ENSG00000181513 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8NC06
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ST9
Query on ST9

Download Ideal Coordinates CCD File 
H [auth A]
J [auth B]
L [auth C]
N [auth D]
Q [auth E]
H [auth A],
J [auth B],
L [auth C],
N [auth D],
Q [auth E],
T [auth F]
STEAROYL-COENZYME A
C39 H70 N7 O17 P3 S
SIARJEKBADXQJG-LFZQUHGESA-N
COA
Query on COA

Download Ideal Coordinates CCD File 
O [auth D],
R [auth E]
COENZYME A
C21 H36 N7 O16 P3 S
RGJOEKWQDUBAIZ-IBOSZNHHSA-N
STE
Query on STE

Download Ideal Coordinates CCD File 
G [auth A]
I [auth B]
K [auth C]
M [auth D]
P [auth E]
G [auth A],
I [auth B],
K [auth C],
M [auth D],
P [auth E],
S [auth F]
STEARIC ACID
C18 H36 O2
QIQXTHQIDYTFRH-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.60 Å
  • R-Value Free: 0.236 
  • R-Value Work: 0.206 
  • R-Value Observed: 0.207 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 85.06α = 90
b = 95.1β = 110.28
c = 119.74γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
MOSFLMdata reduction
SCALAdata scaling
PHASERphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2009-07-28
    Type: Initial release
  • Version 1.1: 2012-12-05
    Changes: Database references, Derived calculations, Other, Refinement description, Structure summary, Version format compliance
  • Version 1.2: 2013-09-25
    Changes: Advisory, Non-polymer description, Source and taxonomy
  • Version 1.3: 2023-12-13
    Changes: Data collection, Database references, Derived calculations, Other, Refinement description