1ZS6

structure of human nucleoside-diphosphate kinase 3


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.255 
  • R-Value Work: 0.211 
  • R-Value Observed: 0.213 

Starting Model: experimental
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Ligand Structure Quality Assessment 


This is version 1.4 of the entry. See complete history


Literature

Structure of human nucleoside-diphosphate kinase 3

Dimov, S.Choe, J.ARROWSMITH, C.EDWARDS, A.SUNDSTROM, M.BOCHKAREV, A.PARK, H.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Nucleoside diphosphate kinase 3A,
B,
C [auth D]
169Homo sapiensMutation(s): 0 
Gene Names: NME3
EC: 2.7.4.6
UniProt & NIH Common Fund Data Resources
Find proteins for Q13232 (Homo sapiens)
Explore Q13232 
Go to UniProtKB:  Q13232
PHAROS:  Q13232
GTEx:  ENSG00000103024 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ13232
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.255 
  • R-Value Work: 0.211 
  • R-Value Observed: 0.213 
  • Space Group: P 43 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 86.614α = 90
b = 86.614β = 90
c = 126.856γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
SBC-Collectdata collection
SCALEPACKdata scaling
MOLREPphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2005-06-07
    Type: Initial release
  • Version 1.1: 2008-04-30
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Derived calculations, Version format compliance
  • Version 1.3: 2017-10-11
    Changes: Refinement description
  • Version 1.4: 2023-08-23
    Changes: Data collection, Database references, Derived calculations, Refinement description