1X4U

Solution structure of the FYVE domain from human FYVE domain containing 27 isoform b protein

• PDB DOI: https://doi.org/10.2210/pdb1X4U/pdb
• BMRB: 11131

• Classification: LIPID BINDING PROTEIN
• Organism(s): Homo sapiens
• Mutation(s): No 
• Membrane Protein: Yes  OPM


• Deposited: 2005-05-15 Released: 2005-11-15 
• Deposition Author(s): Tomizawa, T., Kigawa, T., Koshiba, S., Inoue, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: target function, structures with the lowest energy, structures with the least restraint violations 

Literature

Solution structure of the FYVE domain from human FYVE domain containing 27 isoform b protein

Tomizawa, T., Kigawa, T., Koshiba, S., Inoue, M., Yokoyama, S.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 8.79 kDa 
• Atom Count: 598 
• Modelled Residue Count: 84 
• Deposited Residue Count: 84 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Zinc finger, FYVE domain containing 27 isoform b	A	84	Homo sapiens	Mutation(s): 0  Gene Names: ZFYVE27 Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for Q5T4F4 (Homo sapiens) Explore Q5T4F4  Go to UniProtKB:  Q5T4F4
PHAROS:  Q5T4F4 GTEx:  ENSG00000155256

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
ZN	B [auth A], C [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: target function, structures with the lowest energy, structures with the least restraint violations 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2005-11-15 
Deposition Author(s): Tomizawa, T., Kigawa, T., Koshiba, S., Inoue, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History  

• Version 1.0: 2005-11-15
  Type: Initial release
  
• Version 1.1: 2008-04-30
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2022-03-02
  Changes: Data collection, Database references, Derived calculations
• Version 1.4: 2024-05-29
  Changes: Data collection