Cryo-EM structure of human DNMT3A N-terminal domain bound to H2AK119Ub nucleosome
Chen, X., Song, J.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
DNA (cytosine-5)-methyltransferase 3A | 98 | Homo sapiens | Mutation(s): 0  Gene Names: DNMT3A | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9Y6K1 (Homo sapiens) Explore Q9Y6K1  Go to UniProtKB:  Q9Y6K1 | |||||
PHAROS:  Q9Y6K1 GTEx:  ENSG00000119772  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9Y6K1 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Ubiquitin | 76 | Homo sapiens | Mutation(s): 0  Gene Names: UBC | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P0CG48 (Homo sapiens) Explore P0CG48  Go to UniProtKB:  P0CG48 | |||||
PHAROS:  P0CG48 GTEx:  ENSG00000150991  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0CG48 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 5 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Histone H3.3C | F [auth I], J [auth O] | 136 | Xenopus laevis | Mutation(s): 0  Gene Names: h3-5 | |
UniProt | |||||
Find proteins for P02302 (Xenopus laevis) Explore P02302  Go to UniProtKB:  P02302 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P02302 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 6 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Histone H4 | G [auth J], K [auth Q] | 103 | Xenopus laevis | Mutation(s): 0  Gene Names: LOC121398084 | |
UniProt | |||||
Find proteins for P62799 (Xenopus laevis) Explore P62799  Go to UniProtKB:  P62799 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P62799 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 7 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Histone H2A | H [auth K], L [auth R] | 130 | Xenopus laevis | Mutation(s): 1  Gene Names: h2ac14.L | |
UniProt | |||||
Find proteins for P06897 (Xenopus laevis) Explore P06897  Go to UniProtKB:  P06897 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P06897 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 8 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Histone H2B 1.1 | I [auth M], M [auth S] | 123 | Xenopus laevis | Mutation(s): 1  | |
UniProt | |||||
Find proteins for P02281 (Xenopus laevis) Explore P02281  Go to UniProtKB:  P02281 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P02281 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Length | Organism | Image | |
nucleosome DNA | 180 | Homo sapiens | |||
Sequence AnnotationsExpand | |||||
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Entity ID: 4 | |||||
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Molecule | Chains | Length | Organism | Image | |
nucleosome DNA | E [auth H] | 180 | Homo sapiens | ||
Sequence AnnotationsExpand | |||||
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Funding Organization | Location | Grant Number |
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National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | -- |