8I4A

Cryo-EM structure of dipyridamole-bound ABCC4


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Cryo-EM structure ofABCC4

Chen, Y.Wang, L.Hou, W.T.Zhou, C.Z.Chen, Y.Li, Q.

(2023) Nat Cardiovasc Res 


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
ATP-binding cassette sub-family C member 41,325Homo sapiensMutation(s): 0 
Gene Names: ABCC4MOATBMRP4
EC: 7.6.2 (PDB Primary Data), 7.6.2.2 (PDB Primary Data), 7.6.2.3 (PDB Primary Data)
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for O15439 (Homo sapiens)
Explore O15439 
Go to UniProtKB:  O15439
PHAROS:  O15439
GTEx:  ENSG00000125257 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO15439
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
H9F (Subject of Investigation/LOI)
Query on H9F

Download Ideal Coordinates CCD File 
B [auth A]2-[[2-[bis(2-hydroxyethyl)amino]-4,8-di(piperidin-1-yl)pyrimido[5,4-d]pyrimidin-6-yl]-(2-hydroxyethyl)amino]ethanol
C24 H40 N8 O4
IZEKFCXSFNUWAM-UHFFFAOYSA-N
Binding Affinity Annotations 
IDSourceBinding Affinity
H9F BindingDB:  8I4A IC50: min: 2000, max: 8300 (nM) from 2 assay(s)
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.40 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.18.2_3874:

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Ministry of Science and Technology (MoST, China)China2019YFA0508500
Chinese Academy of SciencesChinaXDB37020202

Revision History  (Full details and data files)

  • Version 1.0: 2023-05-24
    Type: Initial release
  • Version 1.1: 2024-07-03
    Changes: Data collection