8SXS

Crystal structure of a Nudix hydrolase effector from Magnaporthe oryzae

• PDB DOI: https://doi.org/10.2210/pdb8SXS/pdb

• Classification: HYDROLASE
• Organism(s): Pyricularia oryzae 70-15
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2023-05-23 Released: 2023-11-22 
• Deposition Author(s): McCombe, C.L., Ericsson, D.J., Williams, S.J.
• Funding Organization(s): Australian Research Council (ARC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.57 Å
• R-Value Free: 0.196 
• R-Value Work: 0.156 
• R-Value Observed: 0.158 

Starting Model: in silico

Literature

Plant pathogenic fungi hijack phosphate starvation signaling with conserved enzymatic effectors

McCombe, C.L., Wegner, A., Zamora, C.S., Casanova, F., Aditya, S., Greenwood, J.R., Wirtz, L., de Paula, S., England, E., Shang, S., Ericsson, D.J., Oliveira-Garcia, E., Williams, S.J., Schaffrath, U.

(2023) bioRxiv 

• DOI: https://doi.org/10.1101/2023.11.14.566975

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 27.38 kDa 
• Atom Count: 2,387 
• Modelled Residue Count: 252 
• Deposited Residue Count: 252 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Nudix hydrolase domain-containing protein	A, B	126	Pyricularia oryzae 70-15	Mutation(s): 0  Gene Names: MGG_14156
UniProt
Find proteins for G5EH10 (Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958)) Explore G5EH10  Go to UniProtKB:  G5EH10

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.57 Å
• R-Value Free: 0.196 
• R-Value Work: 0.156 
• R-Value Observed: 0.158 
• Space Group: P 2₁ 2₁ 2₁
• Diffraction Data: https://doi.org/10.18430/M38SXS

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 59.188	α = 90
b = 60.545	β = 90
c = 62.492	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing
Coot	model building
PHENIX	model building

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2023-11-22 
Deposition Author(s): McCombe, C.L., Ericsson, D.J., Williams, S.J.

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Funding Organization	Location	Grant Number
Australian Research Council (ARC)	Australia	DE160100893
Australian Research Council (ARC)	Australia	FT200100135

Revision History  

• Version 1.0: 2023-11-22
  Type: Initial release
  
• Version 1.1: 2024-11-06
  Changes: Structure summary