(NEDD8)-CRL2VHL-MZ1-Brd4BD2-Ub(G76S, K48C)-UBE2R1(C93K, S138C, C191S, C223S)-Ub
Crowe, C., Nakasone, M.A., Ciulli, A.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Isoform B of Bromodomain-containing protein 4 | 111 | Homo sapiens | Mutation(s): 0  Gene Names: BRD4, HUNK1 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for O60885 (Homo sapiens) Explore O60885  Go to UniProtKB:  O60885 | |||||
PHAROS:  O60885 GTEx:  ENSG00000141867  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | O60885 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
von Hippel-Lindau disease tumor suppressor | 160 | Homo sapiens | Mutation(s): 0  Gene Names: VHL | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P40337 (Homo sapiens) Explore P40337  Go to UniProtKB:  P40337 | |||||
PHAROS:  P40337 GTEx:  ENSG00000134086  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P40337 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Elongin-C | C [auth D] | 96 | Homo sapiens | Mutation(s): 0  Gene Names: ELOC, TCEB1 | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q15369 (Homo sapiens) Explore Q15369  Go to UniProtKB:  Q15369 | |||||
PHAROS:  Q15369 GTEx:  ENSG00000154582  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q15369 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 4 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Elongin-B | D [auth C] | 104 | Homo sapiens | Mutation(s): 0  Gene Names: ELOB, TCEB2 | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q15370 (Homo sapiens) Explore Q15370  Go to UniProtKB:  Q15370 | |||||
PHAROS:  Q15370 GTEx:  ENSG00000103363  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q15370 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 5 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Cullin-2 | 745 | Homo sapiens | Mutation(s): 0  Gene Names: CUL2 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q13617 (Homo sapiens) Explore Q13617  Go to UniProtKB:  Q13617 | |||||
PHAROS:  Q13617 GTEx:  ENSG00000108094  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q13617 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 6 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Ubiquitin-conjugating enzyme E2 R1 | F [auth G] | 236 | Homo sapiens | Mutation(s): 0  Gene Names: CDC34, UBCH3, UBE2R1 EC: 2.3.2.23 (PDB Primary Data), 2.3.2.24 (PDB Primary Data) | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P49427 (Homo sapiens) Explore P49427  Go to UniProtKB:  P49427 | |||||
PHAROS:  P49427 GTEx:  ENSG00000099804  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P49427 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 7 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
NEDD8 | G [auth N] | 77 | Homo sapiens | Mutation(s): 0  Gene Names: NEDD8 | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q15843 (Homo sapiens) Explore Q15843  Go to UniProtKB:  Q15843 | |||||
PHAROS:  Q15843 GTEx:  ENSG00000129559  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q15843 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 8 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
E3 ubiquitin-protein ligase RBX1, N-terminally processed | H [auth R] | 96 | Homo sapiens | Mutation(s): 0  Gene Names: RBX1, RNF75, ROC1 | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P62877 (Homo sapiens) Explore P62877  Go to UniProtKB:  P62877 | |||||
PHAROS:  P62877 GTEx:  ENSG00000100387  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P62877 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 9 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Polyubiquitin-B | I [auth U] | 76 | Homo sapiens | Mutation(s): 0  Gene Names: UBB | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P0CG48 (Homo sapiens) Explore P0CG48  Go to UniProtKB:  P0CG48 | |||||
PHAROS:  P0CG48 GTEx:  ENSG00000150991  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0CG48 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
759 (Subject of Investigation/LOI) Query on 759 | J [auth B] | (2~{S},4~{R})-1-[(2~{S})-2-[2-[2-[2-[2-[2-[(9~{S})-7-(4-chlorophenyl)-4,5,13-trimethyl-3-thia-1,8,11,12-tetrazatricyclo[8.3.0.0^{2,6}]trideca-2(6),4,7,10,12-pentaen-9-yl]ethanoylamino]ethoxy]ethoxy]ethoxy]ethanoylamino]-3,3-dimethyl-butanoyl]-~{N}-[[4-(4-methyl-2,3-dihydro-1,3-thiazol-5-yl)phenyl]methyl]-4-oxidanyl-pyrrolidine-2-carboxamide C49 H62 Cl N9 O8 S2 HJITZUXCPZGZPX-PYNGZGNASA-N | |||
ZN Query on ZN | K [auth R], L [auth R], M [auth R] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |
Funding Organization | Location | Grant Number |
---|---|---|
European Research Council (ERC) | European Union | ERC-2012-StG-311460 |
Innovative Medicines Initiative | Switzerland | 875510 |
Wellcome Trust | United Kingdom | 223816/Z/21/Z |
Medical Research Council (MRC, United Kingdom) | United Kingdom | 4050845509 |
European Research Council (ERC) | European Union | 851478 |