Structural mechanisms of ligand binding and signaling in lysophosphatidylserine receptors
Gong, W., Liu, G., Li, X., Wang, Y., Zhang, X.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Guanine nucleotide-binding protein G(i) subunit alpha-1 | 354 | Homo sapiens | Mutation(s): 4  Gene Names: GNAI1 Membrane Entity: Yes  | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P63096 (Homo sapiens) Explore P63096  Go to UniProtKB:  P63096 | |||||
PHAROS:  P63096 GTEx:  ENSG00000127955  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P63096 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 | 376 | Homo sapiens | Mutation(s): 0  Gene Names: GNB1 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P62873 (Homo sapiens) Explore P62873  Go to UniProtKB:  P62873 | |||||
PHAROS:  P62873 GTEx:  ENSG00000078369  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P62873 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 3 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2 | 71 | Homo sapiens | Mutation(s): 0  Gene Names: GNG2 Membrane Entity: Yes  | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P59768 (Homo sapiens) Explore P59768  Go to UniProtKB:  P59768 | |||||
PHAROS:  P59768 GTEx:  ENSG00000186469  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P59768 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 4 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Antibody fragment scFv16 | D [auth E] | 255 | synthetic construct | Mutation(s): 0  | |
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 5 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Probable G-protein coupled receptor 34 | E [auth R] | 572 | Homo sapiens | Mutation(s): 0  Gene Names: GPR34 Membrane Entity: Yes  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9UPC5 (Homo sapiens) Explore Q9UPC5  Go to UniProtKB:  Q9UPC5 | |||||
PHAROS:  Q9UPC5 GTEx:  ENSG00000171659  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9UPC5 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
TJR (Subject of Investigation/LOI) Query on TJR | F [auth R] | [(2~{R})-2-oxidanyl-3-phosphonooxy-propyl] octadecanoate C21 H43 O7 P LAYXSTYJRSVXIH-HXUWFJFHSA-N | |||
CLR Query on CLR | H [auth R] | CHOLESTEROL C27 H46 O HVYWMOMLDIMFJA-DPAQBDIFSA-N | |||
SER Query on SER | G [auth R] | SERINE C3 H7 N O3 MTCFGRXMJLQNBG-REOHCLBHSA-N |
Task | Software Package | Version |
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MODEL REFINEMENT | PHENIX | 1.20.1_4487: |
Funding Organization | Location | Grant Number |
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Not funded | -- |