Crystal Structure of Orotidine 5'-phosphate decarboxylase from Klebsiella pneumoniae in complex with Guanosine-5'-monophosphate
Abendroth, J., Davies, D.R., Lorimer, D.D., Horanyi, P.S., Edwards, T.E.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Orotidine 5'-phosphate decarboxylase | 236 | Klebsiella pneumoniae subsp. pneumoniae HS11286 | Mutation(s): 0  Gene Names: pyrF, KPHS_21850 EC: 4.1.1.23 | ||
UniProt | |||||
Find proteins for A0A0H3GNE4 (Klebsiella pneumoniae subsp. pneumoniae (strain HS11286)) Explore A0A0H3GNE4  Go to UniProtKB:  A0A0H3GNE4 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A0H3GNE4 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
U5P (Subject of Investigation/LOI) Query on U5P | K [auth A], L [auth B], N [auth C], P [auth E], R [auth F] | URIDINE-5'-MONOPHOSPHATE C9 H13 N2 O9 P DJJCXFVJDGTHFX-XVFCMESISA-N | |||
EDO Query on EDO | M [auth B], O [auth C], Q [auth F] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 61.71 | α = 100.942 |
b = 91.31 | β = 100.364 |
c = 127.73 | γ = 91.113 |
Software Name | Purpose |
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XDS | data reduction |
XSCALE | data scaling |
PHENIX | refinement |
PDB_EXTRACT | data extraction |
MoRDa | phasing |
Coot | model building |
Funding Organization | Location | Grant Number |
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National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | HHSN272201700059C |