Crystal structure of siderophore binding protein VatD from Vibrio vulnificus M2799 complexed with Desferal
Tomoo, K., Miyamoto, K.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Putative periplasm binding protein | 280 | Vibrio vulnificus | Mutation(s): 0  Gene Names: fhuD | ||
UniProt | |||||
Find proteins for Q845T3 (Vibrio vulnificus) Explore Q845T3  Go to UniProtKB:  Q845T3 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q845T3 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
KTY (Subject of Investigation/LOI) Query on KTY | B [auth A] | desferrioxamine B C25 H48 N6 O8 UBQYURCVBFRUQT-UHFFFAOYSA-N | |||
FE Query on FE | C [auth A], D [auth A] | FE (III) ION Fe VTLYFUHAOXGGBS-UHFFFAOYSA-N | |||
MG Query on MG | E [auth A], F [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 34.8 | α = 90 |
b = 57.89 | β = 95.02 |
c = 62.7 | γ = 90 |
Software Name | Purpose |
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REFMAC | refinement |
CrystalClear | data reduction |
CrystalClear | data scaling |
MOLREP | phasing |
Funding Organization | Location | Grant Number |
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Not funded | -- |