7F36

TacT complexed with acetyl-glycyl-tRNAGly


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.10 Å
  • R-Value Free: 0.263 
  • R-Value Work: 0.208 
  • R-Value Observed: 0.211 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Molecular basis of glycyl-tRNAGly acetylation by TacT from Salmonella Typhimurium

Yashiro, Y.Zhang, C.Sakaguchi, Y.Suzuki, T.Tomita, K.

(2021) Cell Rep 37: 110130


Macromolecules

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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
N-acetyltransferase domain-containing proteinA,
B,
D,
E [auth C]
169Salmonella enterica subsp. enterica serovar Typhimurium str. LT2Mutation(s): 1 
Gene Names: STM3651
UniProt
Find proteins for Q8ZL98 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720))
Explore Q8ZL98 
Go to UniProtKB:  Q8ZL98
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8ZL98
Sequence Annotations
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  • Reference Sequence
Find similar nucleic acids by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains LengthOrganismImage
RNA (76-MER)C [auth F],
F [auth G],
G [auth H],
H [auth E]
76Escherichia coli
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
AAC
Query on AAC

Download Ideal Coordinates CCD File 
NA [auth E]ACETYLAMINO-ACETIC ACID
C4 H7 N O3
OKJIRPAQVSHGFK-UHFFFAOYSA-N
CA
Query on CA

Download Ideal Coordinates CCD File 
AA [auth G]
BA [auth G]
CA [auth G]
DA [auth G]
EA [auth G]
AA [auth G],
BA [auth G],
CA [auth G],
DA [auth G],
EA [auth G],
FA [auth H],
GA [auth H],
HA [auth H],
I [auth A],
IA [auth H],
J [auth B],
JA [auth H],
K [auth F],
KA [auth H],
L [auth F],
LA [auth H],
M [auth F],
MA [auth H],
N [auth F],
O [auth F],
OA [auth E],
P [auth F],
PA [auth E],
Q [auth F],
QA [auth E],
R [auth F],
RA [auth E],
S [auth F],
SA [auth E],
T [auth F],
TA [auth E],
U [auth F],
UA [auth E],
V [auth F],
VA [auth E],
W [auth F],
WA [auth E],
X [auth D],
XA [auth E],
Y [auth C],
Z [auth G]
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.10 Å
  • R-Value Free: 0.263 
  • R-Value Work: 0.208 
  • R-Value Observed: 0.211 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 52.743α = 90
b = 121.873β = 91.07
c = 127.257γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
PDB_EXTRACTdata extraction
XDSdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Japan Society for the Promotion of Science (JSPS)JapanLS136
Japan Society for the Promotion of Science (JSPS)Japan18H03980
Ministry of Education, Culture, Sports, Science and Technology (Japan)Japan26113002
Japan Society for the Promotion of Science (JSPS)Japan19K16069

Revision History  (Full details and data files)

  • Version 1.0: 2021-12-22
    Type: Initial release
  • Version 1.1: 2021-12-29
    Changes: Database references
  • Version 1.2: 2023-11-29
    Changes: Data collection, Refinement description