7CP9 | pdb_00007cp9

Cryo-EM structure of human mitochondrial translocase TOM complex at 3.0 angstrom.

PDB DOI: https://doi.org/10.2210/pdb7CP9/pdb
EM Map EMD-30421: EMDB EMDataResource

Classification: TRANSLOCASE
Organism(s): Homo sapiens
Expression System: Homo sapiens
Mutation(s): No
Membrane Protein: Yes PDBTMMemProtMDmpstruc

Deposited: 2020-08-06 Released: 2021-04-28
Deposition Author(s): Guan, Z., Yan, L., Wang, Q., Yan, C., Yin, P.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.00 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Structural insights into assembly of human mitochondrial translocase TOM complex.

Guan, Z., Yan, L., Wang, Q., Qi, L., Hong, S., Gong, Z., Yan, C., Yin, P.

(2021) Cell Discov 7: 22-22

PubMed: 33846286 Search on PubMedSearch on PubMed Central
DOI: https://doi.org/10.1038/s41421-021-00252-7
Primary Citation of Related Structures:
7CP9

Organizational Affiliation

National Key Laboratory of Crop Genetic Improvement and National Centre of Plant Gene Research, Huazhong Agricultural University, Wuhan, Hubei, 430070, China.

Macromolecule Content

Total Structure Weight: 156.23 kDa
Atom Count: 8,530
Modelled Residue Count: 1,021
Deposited Residue Count: 1,366
Unique protein chains: 5

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Mitochondrial import receptor subunit TOM5 homolog	A, B	51	Homo sapiens	Mutation(s): 0 Gene Names: TOMM5, C9orf105, TOM5 Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for Q8N4H5 (Homo sapiens) Explore Q8N4H5 Go to UniProtKB: Q8N4H5
GTEx: ENSG00000175768
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q8N4H5
Sequence Annotations Expand
Reference Sequence LOADING

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(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Mitochondrial import receptor subunit TOM6 homolog	C, D	74	Homo sapiens	Mutation(s): 0 Gene Names: TOMM6, OBTP, TOM6 Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for Q96B49 (Homo sapiens) Explore Q96B49 Go to UniProtKB: Q96B49
PHAROS: Q96B49 GTEx: ENSG00000214736
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q96B49
Sequence Annotations Expand
Reference Sequence LOADING

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(by identity cutoff) | 3D Structure

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Mitochondrial import receptor subunit TOM7 homolog	E, F	55	Homo sapiens	Mutation(s): 0 Gene Names: TOMM7, TOM7, TOMM07, AD-014 Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for Q9P0U1 (Homo sapiens) Explore Q9P0U1 Go to UniProtKB: Q9P0U1
PHAROS: Q9P0U1 GTEx: ENSG00000196683
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9P0U1
Sequence Annotations Expand
Reference Sequence LOADING

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(by identity cutoff) | 3D Structure

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
Mitochondrial import receptor subunit TOM22 homolog	G, H	142	Homo sapiens	Mutation(s): 0 Gene Names: TOMM22, TOM22 Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for Q9NS69 (Homo sapiens) Explore Q9NS69 Go to UniProtKB: Q9NS69
PHAROS: Q9NS69 GTEx: ENSG00000100216
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9NS69
Sequence Annotations Expand
Reference Sequence LOADING

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(by identity cutoff) | 3D Structure

Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
Mitochondrial import receptor subunit TOM40 homolog	I, J	361	Homo sapiens	Mutation(s): 0 Gene Names: TOMM40, C19orf1, PEREC1, TOM40 Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for O96008 (Homo sapiens) Explore O96008 Go to UniProtKB: O96008
PHAROS: O96008 GTEx: ENSG00000130204
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	O96008
Sequence Annotations Expand
Reference Sequence LOADING

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
PC1 (Subject of Investigation/LOI) Query on PC1 Download Ideal Coordinates CCD File SDF format, chain K [auth C] SDF format, chain L [auth E] SDF format, chain M [auth E] SDF format, chain N [auth F] SDF format, chain O [auth F] SDF format, chain P [auth G] SDF format, chain Q [auth G] SDF format, chain R [auth G] SDF format, chain S [auth H] SDF format, chain T [auth H] SDF format, chain U [auth J] MOL2 format, chain K [auth C] MOL2 format, chain L [auth E] MOL2 format, chain M [auth E] MOL2 format, chain N [auth F] MOL2 format, chain O [auth F] MOL2 format, chain P [auth G] MOL2 format, chain Q [auth G] MOL2 format, chain R [auth G] MOL2 format, chain S [auth H] MOL2 format, chain T [auth H] MOL2 format, chain U [auth J] mmCIF format, chain K [auth C] mmCIF format, chain L [auth E] mmCIF format, chain M [auth E] mmCIF format, chain N [auth F] mmCIF format, chain O [auth F] mmCIF format, chain P [auth G] mmCIF format, chain Q [auth G] mmCIF format, chain R [auth G] mmCIF format, chain S [auth H] mmCIF format, chain T [auth H] mmCIF format, chain U [auth J]	K [auth C] L [auth E] M [auth E] N [auth F] O [auth F] K [auth C], L [auth E], M [auth E], N [auth F], O [auth F], P [auth G], Q [auth G], R [auth G], S [auth H], T [auth H], U [auth J]	1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE C₄₄ H₈₈ N O₈ P NRJAVPSFFCBXDT-HUESYALOSA-N		Interactions Focus chain K [auth C] Focus chain L [auth E] Focus chain M [auth E] Focus chain N [auth F] Focus chain O [auth F] Focus chain P [auth G] Focus chain Q [auth G] Focus chain R [auth G] Focus chain S [auth H] Focus chain T [auth H] Focus chain U [auth J] Interactions & Density Focus chain K [auth C] Focus chain L [auth E] Focus chain M [auth E] Focus chain N [auth F] Focus chain O [auth F] Focus chain P [auth G] Focus chain Q [auth G] Focus chain R [auth G] Focus chain S [auth H] Focus chain T [auth H] Focus chain U [auth J]