Download MendeleyTransition state analogue of small G protein in complex with relevant GAP
Baumann, P., Jin, Y.To be published.
7QTM
Transition state analogue of small G protein in complex with relevant GAP
- PDB DOI: https://doi.org/10.2210/pdb7QTM/pdb
- Classification: HYDROLASE
- Organism(s): Homo sapiens
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes
- Deposited: 2022-01-14 Released: 2023-01-25
- Funding Organization(s): Wellcome Trust
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.25 Å
- R-Value Free: 0.304
- R-Value Work: 0.220
- R-Value Observed: 0.224
Starting Model: experimental
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This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Rho GTPase-activating protein 1 | A, C [auth H] | 244 | Homo sapiens | Mutation(s): 1 Gene Names: ARHGAP1, CDC42GAP, RHOGAP1 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q07960 (Homo sapiens) Explore Q07960 Go to UniProtKB: Q07960 | |||||
PHAROS: Q07960 GTEx: ENSG00000175220 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q07960 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Transforming protein RhoA | B, D [auth I] | 192 | Homo sapiens | Mutation(s): 1 Gene Names: RHOA, ARH12, ARHA, RHO12 EC: 3.6.5.2 |  |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P61586 (Homo sapiens) Explore P61586 Go to UniProtKB: P61586 | |||||
PHAROS: P61586 GTEx: ENSG00000067560 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P61586 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GDP (Subject of Investigation/LOI) Query on GDP | E [auth B], H [auth I] | GUANOSINE-5'-DIPHOSPHATE C10 H15 N5 O11 P2 QGWNDRXFNXRZMB-UUOKFMHZSA-N |  | ||
| MGF (Subject of Investigation/LOI) Query on MGF | F [auth B], I | TRIFLUOROMAGNESATE F3 Mg GJOMWUHGUQLOAC-UHFFFAOYSA-K |  | ||
| MG (Subject of Investigation/LOI) Query on MG | G [auth B], J [auth I] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| F2Y Query on F2Y | B, D [auth I] | L-PEPTIDE LINKING | C9 H9 F2 N O3 |  | TYR |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.25 Å
- R-Value Free: 0.304
- R-Value Work: 0.220
- R-Value Observed: 0.224
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 73.632 | α = 90 |
| b = 66.604 | β = 95.02 |
| c = 76.463 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| DIALS | data scaling |
| Coot | model building |
| DIALS | data reduction |
| MOLREP | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2023-01-25 Deposition Author(s): Baumann, P., Jin, Y.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Wellcome Trust | United Kingdom | 209057/Z/17/Z |
Revision History (Full details and data files)
- Version 1.0: 2023-01-25
Type: Initial release - Version 1.1: 2024-01-31
Changes: Data collection, Derived calculations, Refinement description
