7QP7

Structure of the human 48S initiation complex in closed state (h48S AUG closed)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: experimental
View more details

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Conformational rearrangements upon start codon recognition in human 48S translation initiation complex.

Yi, S.H.Petrychenko, V.Schliep, J.E.Goyal, A.Linden, A.Chari, A.Urlaub, H.Stark, H.Rodnina, M.V.Adio, S.Fischer, N.

(2022) Nucleic Acids Res 50: 5282-5298

  • DOI: https://doi.org/10.1093/nar/gkac283
  • Primary Citation of Related Structures:  
    7QP6, 7QP7

  • PubMed Abstract: 

    Selection of the translation start codon is a key step during protein synthesis in human cells. We obtained cryo-EM structures of human 48S initiation complexes and characterized the intermediates of codon recognition by kinetic methods using eIF1A as a reporter. Both approaches capture two distinct ribosome populations formed on an mRNA with a cognate AUG codon in the presence of eIF1, eIF1A, eIF2-GTP-Met-tRNAiMet and eIF3. The 'open' 40S subunit conformation differs from the human 48S scanning complex and represents an intermediate preceding the codon recognition step. The 'closed' form is similar to reported structures of complexes from yeast and mammals formed upon codon recognition, except for the orientation of eIF1A, which is unique in our structure. Kinetic experiments show how various initiation factors mediate the population distribution of open and closed conformations until 60S subunit docking. Our results provide insights into the timing and structure of human translation initiation intermediates and suggest the differences in the mechanisms of start codon selection between mammals and yeast.


  • Organizational Affiliation

    Department of Physical Biochemistry, Max Planck Institute for Multidisciplinary Sciences, Göttingen 37077, Germany.


Macromolecules

Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Eukaryotic translation initiation factor 3 subunit BA [auth 1]813Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P55884 (Homo sapiens)
Explore P55884 
Go to UniProtKB:  P55884
PHAROS:  P55884
GTEx:  ENSG00000106263 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP55884
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Eukaryotic translation initiation factor 3 subunit KB [auth 3]218Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for Q9UBQ5 (Homo sapiens)
Explore Q9UBQ5 
Go to UniProtKB:  Q9UBQ5
PHAROS:  Q9UBQ5
GTEx:  ENSG00000178982 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9UBQ5
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Eukaryotic translation initiation factor 3 subunit FC [auth 4]357Homo sapiensMutation(s): 0 
EC: 3.4.19.12
UniProt & NIH Common Fund Data Resources
Find proteins for O00303 (Homo sapiens)
Explore O00303 
Go to UniProtKB:  O00303
PHAROS:  O00303
GTEx:  ENSG00000175390 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO00303
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Eukaryotic translation initiation factor 3 subunit LD [auth 5]564Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Y262 (Homo sapiens)
Explore Q9Y262 
Go to UniProtKB:  Q9Y262
GTEx:  ENSG00000100129 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9Y262
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Eukaryotic translation initiation factor 3 subunit ME [auth 6]374Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for Q7L2H7 (Homo sapiens)
Explore Q7L2H7 
Go to UniProtKB:  Q7L2H7
PHAROS:  Q7L2H7
GTEx:  ENSG00000149100 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ7L2H7
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Eukaryotic translation initiation factor 3 subunit HG [auth 8]352Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for O15372 (Homo sapiens)
Explore O15372 
Go to UniProtKB:  O15372
PHAROS:  O15372
GTEx:  ENSG00000147677 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO15372
Sequence Annotations
Expand
  • Reference Sequence

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
60S ribosomal protein L41H [auth 9]25Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P62945 (Homo sapiens)
Explore P62945 
Go to UniProtKB:  P62945
PHAROS:  P62945
GTEx:  ENSG00000229117 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62945
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S11J [auth B]158Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P62280 (Homo sapiens)
Explore P62280 
Go to UniProtKB:  P62280
PHAROS:  P62280
GTEx:  ENSG00000142534 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62280
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S4, X isoformK [auth C]263Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P62701 (Homo sapiens)
Explore P62701 
Go to UniProtKB:  P62701
PHAROS:  P62701
GTEx:  ENSG00000198034 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62701
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S9L [auth D]194Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P46781 (Homo sapiens)
Explore P46781 
Go to UniProtKB:  P46781
PHAROS:  P46781
GTEx:  ENSG00000170889 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP46781
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S23M [auth E]143Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P62266 (Homo sapiens)
Explore P62266 
Go to UniProtKB:  P62266
PHAROS:  P62266
GTEx:  ENSG00000186468 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62266
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S30N [auth F]59Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P62861 (Homo sapiens)
Explore P62861 
Go to UniProtKB:  P62861
PHAROS:  P62861
GTEx:  ENSG00000149806 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62861
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S7O [auth G]194Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P62081 (Homo sapiens)
Explore P62081 
Go to UniProtKB:  P62081
PHAROS:  P62081
GTEx:  ENSG00000171863 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62081
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 16
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S27P [auth H]84Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P42677 (Homo sapiens)
Explore P42677 
Go to UniProtKB:  P42677
PHAROS:  P42677
GTEx:  ENSG00000177954 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP42677
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 17
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S13Q [auth I]151Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P62277 (Homo sapiens)
Explore P62277 
Go to UniProtKB:  P62277
PHAROS:  P62277
GTEx:  ENSG00000110700 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62277
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 18
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S15aR [auth J]130Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P62244 (Homo sapiens)
Explore P62244 
Go to UniProtKB:  P62244
PHAROS:  P62244
GTEx:  ENSG00000134419 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62244
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 19
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S21S [auth K]83Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P63220 (Homo sapiens)
Explore P63220 
Go to UniProtKB:  P63220
PHAROS:  P63220
GTEx:  ENSG00000171858 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP63220
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 20
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S2T [auth L]293Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P15880 (Homo sapiens)
Explore P15880 
Go to UniProtKB:  P15880
PHAROS:  P15880
GTEx:  ENSG00000140988 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP15880
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 21
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S17U [auth M]135Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P08708 (Homo sapiens)
Explore P08708 
Go to UniProtKB:  P08708
PHAROS:  P08708
GTEx:  ENSG00000182774 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP08708
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 22
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein SAV [auth N]295Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P08865 (Homo sapiens)
Explore P08865 
Go to UniProtKB:  P08865
PHAROS:  P08865
GTEx:  ENSG00000168028 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP08865
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 23
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S3aW [auth O]264Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P61247 (Homo sapiens)
Explore P61247 
Go to UniProtKB:  P61247
GTEx:  ENSG00000145425 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP61247
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 24
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S14X [auth P]151Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P62263 (Homo sapiens)
Explore P62263 
Go to UniProtKB:  P62263
PHAROS:  P62263
GTEx:  ENSG00000164587 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62263
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 25
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S26Y [auth Q]115Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P62854 (Homo sapiens)
Explore P62854 
Go to UniProtKB:  P62854
PHAROS:  P62854
GTEx:  ENSG00000197728 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62854
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 26
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S8Z [auth R]208Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P62241 (Homo sapiens)
Explore P62241 
Go to UniProtKB:  P62241
PHAROS:  P62241
GTEx:  ENSG00000142937 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62241
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 27
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S6AA [auth S]249Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P62753 (Homo sapiens)
Explore P62753 
Go to UniProtKB:  P62753
PHAROS:  P62753
GTEx:  ENSG00000137154 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62753
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 28
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S24BA [auth T]133Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P62847 (Homo sapiens)
Explore P62847 
Go to UniProtKB:  P62847
PHAROS:  P62847
GTEx:  ENSG00000138326 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62847
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 29
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S5CA [auth V]204Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P46782 (Homo sapiens)
Explore P46782 
Go to UniProtKB:  P46782
PHAROS:  P46782
GTEx:  ENSG00000083845 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP46782
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 30
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S16DA [auth Y]146Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P62249 (Homo sapiens)
Explore P62249 
Go to UniProtKB:  P62249
PHAROS:  P62249
GTEx:  ENSG00000105193 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62249
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 31
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S3EA [auth Z]243Homo sapiensMutation(s): 0 
EC: 4.2.99.18
UniProt & NIH Common Fund Data Resources
Find proteins for P23396 (Homo sapiens)
Explore P23396 
Go to UniProtKB:  P23396
PHAROS:  P23396
GTEx:  ENSG00000149273 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP23396
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 32
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S10FA [auth a]165Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P46783 (Homo sapiens)
Explore P46783 
Go to UniProtKB:  P46783
PHAROS:  P46783
GTEx:  ENSG00000124614 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP46783
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 33
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S15GA [auth b]145Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P62841 (Homo sapiens)
Explore P62841 
Go to UniProtKB:  P62841
PHAROS:  P62841
GTEx:  ENSG00000115268 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62841
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 34
MoleculeChains Sequence LengthOrganismDetailsImage
Receptor of activated protein C kinase 1HA [auth c]317Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P63244 (Homo sapiens)
Explore P63244 
Go to UniProtKB:  P63244
PHAROS:  P63244
GTEx:  ENSG00000204628 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP63244
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 35
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S19IA [auth d]145Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P39019 (Homo sapiens)
Explore P39019 
Go to UniProtKB:  P39019
PHAROS:  P39019
GTEx:  ENSG00000105372 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP39019
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 36
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S25JA [auth e]125Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P62851 (Homo sapiens)
Explore P62851 
Go to UniProtKB:  P62851
PHAROS:  P62851
GTEx:  ENSG00000118181 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62851
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 37
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S18KA [auth f]152Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P62269 (Homo sapiens)
Explore P62269 
Go to UniProtKB:  P62269
PHAROS:  P62269
GTEx:  ENSG00000231500 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62269
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 38
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S20LA [auth h]119Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P60866 (Homo sapiens)
Explore P60866 
Go to UniProtKB:  P60866
PHAROS:  P60866
GTEx:  ENSG00000008988 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP60866
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 39
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S29MA [auth i]56Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P62273 (Homo sapiens)
Explore P62273 
Go to UniProtKB:  P62273
PHAROS:  P62273
GTEx:  ENSG00000213741 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62273
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 40
MoleculeChains Sequence LengthOrganismDetailsImage
Ubiquitin-40S ribosomal protein S27aNA [auth k]156Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P62979 (Homo sapiens)
Explore P62979 
Go to UniProtKB:  P62979
PHAROS:  P62979
GTEx:  ENSG00000143947 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62979
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 41
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S12OA [auth m]132Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P25398 (Homo sapiens)
Explore P25398 
Go to UniProtKB:  P25398
PHAROS:  P25398
GTEx:  ENSG00000112306 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP25398
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 42
MoleculeChains Sequence LengthOrganismDetailsImage
40S ribosomal protein S28PA [auth n]69Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P62857 (Homo sapiens)
Explore P62857 
Go to UniProtKB:  P62857
PHAROS:  P62857
GTEx:  ENSG00000233927 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62857
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 43
MoleculeChains Sequence LengthOrganismDetailsImage
Eukaryotic translation initiation factor 3 subunit GQA [auth o]320Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for O75821 (Homo sapiens)
Explore O75821 
Go to UniProtKB:  O75821
PHAROS:  O75821
GTEx:  ENSG00000130811 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO75821
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 44
MoleculeChains Sequence LengthOrganismDetailsImage
Eukaryotic translation initiation factor 1A, X-chromosomalRA [auth q]144Homo sapiensMutation(s): 0 
Gene Names: EIF1AXEIF1AEIF4C
UniProt & NIH Common Fund Data Resources
Find proteins for P47813 (Homo sapiens)
Explore P47813 
Go to UniProtKB:  P47813
PHAROS:  P47813
GTEx:  ENSG00000173674 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP47813
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 45
MoleculeChains Sequence LengthOrganismDetailsImage
Eukaryotic translation initiation factor 2 subunit 1SA [auth r]315Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P05198 (Homo sapiens)
Explore P05198 
Go to UniProtKB:  P05198
PHAROS:  P05198
GTEx:  ENSG00000134001 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP05198
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 46
MoleculeChains Sequence LengthOrganismDetailsImage
Eukaryotic translation initiation factor 2 subunit 3TA [auth t]472Homo sapiensMutation(s): 0 
EC: 3.6.5.3
UniProt & NIH Common Fund Data Resources
Find proteins for P41091 (Homo sapiens)
Explore P41091 
Go to UniProtKB:  P41091
PHAROS:  P41091
GTEx:  ENSG00000130741 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP41091
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 47
MoleculeChains Sequence LengthOrganismDetailsImage
Eukaryotic translation initiation factor 3 subunit AUA [auth u]1,382Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for Q14152 (Homo sapiens)
Explore Q14152 
Go to UniProtKB:  Q14152
PHAROS:  Q14152
GTEx:  ENSG00000107581 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ14152
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 48
MoleculeChains Sequence LengthOrganismDetailsImage
Eukaryotic translation initiation factor 3 subunit EVA [auth v]445Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for P60228 (Homo sapiens)
Explore P60228 
Go to UniProtKB:  P60228
PHAROS:  P60228
GTEx:  ENSG00000104408 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP60228
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 50
MoleculeChains Sequence LengthOrganismDetailsImage
Eukaryotic translation initiation factor 3 subunit DXA [auth x]548Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for O15371 (Homo sapiens)
Explore O15371 
Go to UniProtKB:  O15371
PHAROS:  O15371
GTEx:  ENSG00000100353 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO15371
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 51
MoleculeChains Sequence LengthOrganismDetailsImage
Eukaryotic translation initiation factor 3 subunit CYA [auth y]913Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for Q99613 (Homo sapiens)
Explore Q99613 
Go to UniProtKB:  Q99613
PHAROS:  Q99613
GTEx:  ENSG00000184110 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ99613
Sequence Annotations
Expand
  • Reference Sequence
Find similar nucleic acids by:  (by identity cutoff)  |  3D Structure
Entity ID: 6
MoleculeChains LengthOrganismImage
mRNAF [auth 7]255Homo sapiens
Sequence Annotations
Expand
  • Reference Sequence
Find similar nucleic acids by:  (by identity cutoff)  |  3D Structure
Entity ID: 9
MoleculeChains LengthOrganismImage
18S rRNAI [auth A]1,869Homo sapiens
Sequence Annotations
Expand
  • Reference Sequence
Find similar nucleic acids by:  (by identity cutoff)  |  3D Structure
Entity ID: 49
MoleculeChains LengthOrganismImage
Initiator Met-tRNA-iWA [auth w]75Homo sapiens
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3.1
MODEL REFINEMENTISOLDE1.1
MODEL REFINEMENTCoot0.9.4
MODEL REFINEMENTUCSF ChimeraX1.2

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research Foundation (DFG)GermanyLeibniz Prize (to M.V.R.) & SFB 860
Max Planck SocietyGermany--

Revision History  (Full details and data files)

  • Version 1.0: 2022-05-11
    Type: Initial release
  • Version 1.1: 2022-06-01
    Changes: Database references
  • Version 1.2: 2024-04-24
    Changes: Data collection, Refinement description