Download MendeleyStructure of c-Kit with allosteric inhibitor 3G8
Wrasidlo, W.J., Cheresh, D.A.To be published.
6HH1
Structure of c-Kit with allosteric inhibitor 3G8
- PDB DOI: https://doi.org/10.2210/pdb6HH1/pdb
- Classification: TRANSFERASE
- Organism(s): Homo sapiens
- Expression System: Spodoptera frugiperda
- Mutation(s): No
- Deposited: 2018-08-24 Released: 2019-09-18
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.25 Å
- R-Value Free: 0.273
- R-Value Work: 0.204
- R-Value Observed: 0.208
This is version 1.1 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Mast/stem cell growth factor receptor Kit,Mast/stem cell growth factor receptor Kit | 303 | Homo sapiens | Mutation(s): 0 Gene Names: KIT, SCFR EC: 2.7.10.1 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P10721 (Homo sapiens) Explore P10721 Go to UniProtKB: P10721 | |||||
PHAROS: P10721 GTEx: ENSG00000157404 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P10721 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| G4E Query on G4E | C [auth A] | ~{N}-(2,3-dimethylphenyl)-5-(4-pyridin-4-yloxyphenyl)-4~{H}-1,2,4-triazol-3-amine C21 H19 N5 O FRUZWHLTFSTCFH-UHFFFAOYSA-N |  | ||
| PO4 Query on PO4 | B [auth A] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.25 Å
- R-Value Free: 0.273
- R-Value Work: 0.204
- R-Value Observed: 0.208
- Space Group: P 32 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 65.614 | α = 90 |
| b = 65.614 | β = 90 |
| c = 159.004 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| XDS | data reduction |
| SCALA | data scaling |
Entry History
Deposition Data
- Released Date: 2019-09-18 Deposition Author(s): Wrasidlo, W.J., Cheresh, D.A.
Revision History (Full details and data files)
- Version 1.0: 2019-09-18
Type: Initial release - Version 1.1: 2024-05-15
Changes: Data collection, Database references
