6V2U

Crystal structure of the insect cell-expressed WT-BRAF kinase in complex with Dabrafenib


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.78 Å
  • R-Value Free: 0.309 
  • R-Value Work: 0.281 
  • R-Value Observed: 0.282 

Starting Model: experimental
View more details

wwPDB Validation   3D Report Full Report

Currently 6V2U does not have a validation slider image.


This is version 1.1 of the entry. See complete history


Literature

Crystal structure of the insect cell-expressed WT-BRAF kinase in complex with Dabrafenib

Li, K.Gonzalez Del-Pino, G.Park, E.Eck, M.J.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Serine/threonine-protein kinase B-raf
A, B
283Homo sapiensMutation(s): 0 
Gene Names: BRAFBRAF1RAFB1
EC: 2.7.11.1
UniProt & NIH Common Fund Data Resources
Find proteins for P15056 (Homo sapiens)
Explore P15056 
Go to UniProtKB:  P15056
PHAROS:  P15056
GTEx:  ENSG00000157764 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP15056
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Binding Affinity Annotations 
IDSourceBinding Affinity
P06 BindingDB:  6V2U IC50: min: 0.4, max: 11 (nM) from 11 assay(s)
EC50: min: 0.7, max: 529 (nM) from 2 assay(s)
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.78 Å
  • R-Value Free: 0.309 
  • R-Value Work: 0.281 
  • R-Value Observed: 0.282 
  • Space Group: P 41 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 89.618α = 90
b = 89.618β = 90
c = 164.583γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

View Full Validation Report

Currently 6V2U does not have a validation slider image.



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Cancer Institute (NIH/NCI)United StatesP50 CA165962
National Institutes of Health/National Cancer Institute (NIH/NCI)United StatesR50 CA221830
National Institutes of Health/National Cancer Institute (NIH/NCI)United StatesR35 CA242461

Revision History  (Full details and data files)

  • Version 1.0: 2020-12-02
    Type: Initial release
  • Version 1.1: 2023-10-11
    Changes: Data collection, Database references, Refinement description