Crystal structure of Tyrosine-tRNA ligase from Helicobacter pylori G27
Abendroth, J., Dranow, D.M., Lorimer, D.D., Edwards, T.E.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Tyrosine--tRNA ligase | 410 | Helicobacter pylori G27 | Mutation(s): 0  Gene Names: tyrS, HPG27_731 EC: 6.1.1.1 | ||
UniProt | |||||
Find proteins for B5Z7D7 (Helicobacter pylori (strain G27)) Explore B5Z7D7  Go to UniProtKB:  B5Z7D7 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | B5Z7D7 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
IPA Query on IPA | B [auth A] | ISOPROPYL ALCOHOL C3 H8 O KFZMGEQAYNKOFK-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 121.4 | α = 90 |
b = 43.36 | β = 121.21 |
c = 113.7 | γ = 90 |
Software Name | Purpose |
---|---|
XDS | data reduction |
XSCALE | data scaling |
PHENIX | refinement |
PDB_EXTRACT | data extraction |
MoRDa | phasing |
Coot | model building |
SIMBAD | phasing |