5MVM

X-ray structure of the F14'A -N15'A double mutant of GLIC in complex with propofol


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.10 Å
  • R-Value Free: 0.208 
  • R-Value Work: 0.195 
  • R-Value Observed: 0.196 

Starting Model: experimental
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Ligand Structure Quality Assessment 


This is version 1.2 of the entry. See complete history


Literature

X-ray structure of the F14'A -N15'A double mutant of GLIC in complex with propofol

Fourati, Z.Delarue, M.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Proton-gated ion channel
A, B, C, D, E
317Gloeobacter violaceus PCC 7421Mutation(s): 2 
Gene Names: glvIglr4197
Membrane Entity: Yes 
UniProt
Find proteins for Q7NDN8 (Gloeobacter violaceus (strain ATCC 29082 / PCC 7421))
Explore Q7NDN8 
Go to UniProtKB:  Q7NDN8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ7NDN8
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 6 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
PLC
Query on PLC

Download Ideal Coordinates CCD File 
DA [auth C]
EA [auth C]
FA [auth C]
K [auth A]
L [auth A]
DA [auth C],
EA [auth C],
FA [auth C],
K [auth A],
L [auth A],
M [auth A],
NA [auth D],
OA [auth D],
PA [auth D],
V [auth B],
W [auth B],
WA [auth E],
X [auth B],
XA [auth E],
YA [auth E]
DIUNDECYL PHOSPHATIDYL CHOLINE
C32 H65 N O8 P
IJFVSSZAOYLHEE-SSEXGKCCSA-O
LMT
Query on LMT

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F [auth A]
GA [auth C]
IA [auth D]
Q [auth B]
RA [auth E]
F [auth A],
GA [auth C],
IA [auth D],
Q [auth B],
RA [auth E],
SA [auth E]
DODECYL-BETA-D-MALTOSIDE
C24 H46 O11
NLEBIOOXCVAHBD-QKMCSOCLSA-N
PFL
Query on PFL

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HA [auth C],
O [auth A],
P [auth A],
Z [auth B],
ZA [auth E]
2,6-BIS(1-METHYLETHYL)PHENOL
C12 H18 O
OLBCVFGFOZPWHH-UHFFFAOYSA-N
ACT
Query on ACT

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AA [auth C]
G [auth A]
I [auth A]
JA [auth D]
LA [auth D]
AA [auth C],
G [auth A],
I [auth A],
JA [auth D],
LA [auth D],
QA [auth D],
R [auth B],
T [auth B],
TA [auth E],
Y [auth B]
ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
CL
Query on CL

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BA [auth C],
H [auth A],
KA [auth D],
S [auth B],
UA [auth E]
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
NA
Query on NA

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AB [auth E]
CA [auth C]
J [auth A]
MA [auth D]
N [auth A]
AB [auth E],
CA [auth C],
J [auth A],
MA [auth D],
N [auth A],
U [auth B],
VA [auth E]
SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.10 Å
  • R-Value Free: 0.208 
  • R-Value Work: 0.195 
  • R-Value Observed: 0.196 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 181.76α = 90
b = 132.51β = 102.72
c = 160.52γ = 90
Software Package:
Software NamePurpose
BUSTERrefinement
XDSdata reduction
Aimlessdata scaling
REFMACphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
French National Research AgencyFrancePENTAGATE

Revision History  (Full details and data files)

  • Version 1.0: 2018-03-14
    Type: Initial release
  • Version 1.1: 2019-10-16
    Changes: Data collection
  • Version 1.2: 2024-02-07
    Changes: Data collection, Database references, Refinement description