Crystal structure of a nucleoside diphosphate kinase from Naegleria fowleri
Conrady, D.G., Yano, J.K., Lorimer, D., Edwards, T.E.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Nucleoside diphosphate kinase | 159 | Naegleria fowleri | Mutation(s): 0  Gene Names: NF0036070 EC: 2.7.4.6 | ||
UniProt | |||||
Find proteins for A0A1S4NYF9 (Naegleria fowleri) Explore A0A1S4NYF9  Go to UniProtKB:  A0A1S4NYF9 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A1S4NYF9 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
EDO Query on EDO | G [auth A] H [auth B] I [auth B] K [auth C] L [auth D] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
FMT Query on FMT | M [auth D], Q [auth D], T [auth E] | FORMIC ACID C H2 O2 BDAGIHXWWSANSR-UHFFFAOYSA-N | |||
MG Query on MG | J [auth B], N [auth D], O [auth D] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 67.9 | α = 90 |
b = 110.38 | β = 118.55 |
c = 68.14 | γ = 90 |
Software Name | Purpose |
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XSCALE | data scaling |
PHENIX | refinement |
PDB_EXTRACT | data extraction |
XDS | data reduction |
MoRDa | phasing |