5QI7

PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) -- Crystal Structure of human PARP14 Macrodomain 3 in complex with FMOPL000506a

• PDB DOI: https://doi.org/10.2210/pdb5QI7/pdb
• Deposition Group: G_1002047 (changed state) ExploreG_1002047

• Classification: TRANSFERASE
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2018-05-21 Released: 2019-04-10 
• Deposition Author(s): Schuller, M., Talon, R., Krojer, T., Brandao-Neto, J., Douangamath, A., Zhang, R., von Delft, F., Schuler, H., Kessler, B., Knapp, S., Bountra, C., Arrowsmith, C.H., Edwards, A., Elkins, J.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.05 Å
• R-Value Free: 0.163 
• R-Value Work: 0.138 
• R-Value Observed: 0.139 

Literature

PanDDA analysis group deposition of models with modelled events (e.g. bound ligands)

Schuller, M., Talon, R., Krojer, T., Brandao-Neto, J., Douangamath, A., Zhang, R., von Delft, F., Schuler, H., Kessler, B., Knapp, S., Bountra, C., Arrowsmith, C.H., Edwards, A., Elkins, J.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 20.14 kDa 
• Atom Count: 1,744 
• Modelled Residue Count: 182 
• Deposited Residue Count: 183 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Poly [ADP-ribose] polymerase 14	A	183	Homo sapiens	Mutation(s): 0  Gene Names: PARP14, BAL2, KIAA1268 EC: 2.4.2.30 (PDB Primary Data), 2.4.2 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for Q460N5 (Homo sapiens) Explore Q460N5  Go to UniProtKB:  Q460N5
PHAROS:  Q460N5 GTEx:  ENSG00000173193

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
GVV	E [auth A]	~{N}-(4-methyl-2-oxidanyl-phenyl)propanamide C10 H13 N O2 VFXXPGGIPBIYCC-UHFFFAOYSA-N
DMS	D [auth A]	DIMETHYL SULFOXIDE C2 H6 O S IAZDPXIOMUYVGZ-UHFFFAOYSA-N
CL	B [auth A], C [auth A]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.05 Å
• R-Value Free: 0.163 
• R-Value Work: 0.138 
• R-Value Observed: 0.139 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 34.406	α = 90
b = 41.46	β = 90
c = 110.755	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
Aimless	data scaling
PDB_EXTRACT	data extraction
XDS	data reduction
REFMAC	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2019-04-10 
Deposition Author(s): Schuller, M., Talon, R., Krojer, T., Brandao-Neto, J., Douangamath, A., Zhang, R., von Delft, F., Schuler, H., Kessler, B., Knapp, S., Bountra, C., Arrowsmith, C.H., Edwards, A., Elkins, J.

Revision History  

• Version 1.0: 2019-04-10
  Type: Initial release
  
• Version 1.1: 2024-03-06
  Changes: Data collection, Database references